RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 TMEM174Q8WUU8 243 aa16.76■□□□□ 0.27
NUP88-207ENST00000573584 ARHGEF2Q92974 986 aaKnown RBP16.76■□□□□ 0.27
NUP88-207ENST00000573584 MXRA8Q9BRK3 442 aa16.76■□□□□ 0.27
NUP88-207ENST00000573584 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.76■□□□□ 0.27
NUP88-207ENST00000573584 BAIAP2L1Q9UHR4 511 aa16.76■□□□□ 0.27
NUP88-207ENST00000573584 THSD7AQ9UPZ6 1657 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 MYH11P35749 1972 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 ENTPD3O75355 529 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 P4HBP07237 508 aaKnown RBP16.75■□□□□ 0.27
NUP88-207ENST00000573584 CYP11B1P15538 503 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 ITGB5P18084 799 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 KRT17Q04695 432 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 SNX1Q13596 522 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 SGO2Q562F6 1265 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 HAUS6Q7Z4H7 955 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 CHURC1Q8WUH1 139 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 TCP11Q8WWU5 503 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 SH2D3AQ9BRG2 576 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 RANBP17Q9H2T7 1088 aaKnown RBP16.75■□□□□ 0.27
NUP88-207ENST00000573584 ABCF3Q9NUQ8 709 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 ASIC3Q9UHC3 531 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 ZHX2Q9Y6X8 837 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 ATRNL1Q5VV63 1379 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 ECE2O60344 883 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 TOM1O60784 492 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 FKBP1AP62942 108 aaKnown RBP16.75■□□□□ 0.27
NUP88-207ENST00000573584 ZNF568Q3ZCX4 644 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 TBC1D1Q86TI0 1168 aaPredicted RBP16.75■□□□□ 0.27
NUP88-207ENST00000573584 PNMA8AQ86V59 439 aaPredicted RBP16.75■□□□□ 0.27
NUP88-207ENST00000573584 SHC3Q92529 594 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 SEMA4DQ92854 862 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 CCDC127Q96BQ5 260 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 PLVAPQ9BX97 442 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 NOD2Q9HC29 1040 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 AAASQ9NRG9 546 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 WHRNQ9P202 907 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 TMX2Q9Y320 296 aa16.75■□□□□ 0.27
NUP88-207ENST00000573584 TP73O15350 636 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 CLTAP09496 248 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 CREB1P16220 341 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 CDR2Q01850 454 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 SLC27A3Q5K4L6 730 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 GJD4Q96KN9 370 aaPredicted RBP16.74■□□□□ 0.27
NUP88-207ENST00000573584 SERPINB12Q96P63 405 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 ZBTB21Q9ULJ3 1066 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 TMEM120BA0PK00 339 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 TCP11X1B4DZS4 312 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 FSCN2O14926 492 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 PMM2O15305 246 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 RARRES1P49788 294 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 TBC1D10BQ4KMP7 808 aaPredicted RBP16.74■□□□□ 0.27
NUP88-207ENST00000573584 PSPC1Q8WXF1 523 aaKnown RBP16.74■□□□□ 0.27
NUP88-207ENST00000573584 ZNF622Q969S3 477 aaKnown RBP eCLIP16.74■□□□□ 0.272e-6■■□□□ 12.3
NUP88-207ENST00000573584 PRMT6Q96LA8 375 aaPredicted RBP16.74■□□□□ 0.27
NUP88-207ENST00000573584 KCNH7Q9NS40 1196 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 FGFR1OP2Q9NVK5 253 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 GGT7Q9UJ14 662 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 USP15Q9Y4E8 981 aaPredicted RBP16.74■□□□□ 0.27
NUP88-207ENST00000573584 AFF2P51816 1311 aa16.74■□□□□ 0.27
NUP88-207ENST00000573584 GOLGB1Q14789 3259 aaKnown RBP16.74■□□□□ 0.27
NUP88-207ENST00000573584 MAPK13O15264 365 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 ADRB2P07550 413 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 ITIH2P19823 946 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 GTF2BQ00403 316 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 TRMT1LQ7Z2T5 733 aaKnown RBP16.73■□□□□ 0.27
NUP88-207ENST00000573584 CBWD2Q8IUF1 395 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 SLCO2A1Q92959 643 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 MASTLQ96GX5 879 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 USP20Q9Y2K6 914 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 SLC16A4O15374 487 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 CHKAP35790 457 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 PDE6BP35913 854 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 ZYXQ15942 572 aaKnown RBP16.73■□□□□ 0.27
NUP88-207ENST00000573584 GRIPAP1Q4V328 841 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 LDHDQ86WU2 507 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 TBC1D31Q96DN5 1066 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 KCNK9Q9NPC2 374 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 AGAP1Q9UPQ3 857 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 CFAP73A6NFT4 308 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 UBOX5O94941 541 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 ATP5DP30049 168 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 ELF1P32519 619 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 PEX3P56589 373 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 TNIP1Q15025 636 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 SNRNP35Q16560 246 aaKnown RBP16.73■□□□□ 0.27
NUP88-207ENST00000573584 KRT39Q6A163 491 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 MLXIPLQ9NP71 852 aa16.73■□□□□ 0.27
NUP88-207ENST00000573584 C21orf2O43822 256 aa16.72■□□□□ 0.27
NUP88-207ENST00000573584 TRIP13Q15645 432 aaPredicted RBP16.72■□□□□ 0.27
NUP88-207ENST00000573584 NUGGCQ68CJ6 796 aa16.72■□□□□ 0.27
NUP88-207ENST00000573584 CC2D2BQ6DHV5 1058 aa16.72■□□□□ 0.27
NUP88-207ENST00000573584 ACAD10Q6JQN1 1059 aa16.72■□□□□ 0.27
NUP88-207ENST00000573584 RHBDF2Q6PJF5 856 aa16.72■□□□□ 0.27
NUP88-207ENST00000573584 ANKRD42Q8N9B4 389 aa16.72■□□□□ 0.27
NUP88-207ENST00000573584 HELQQ8TDG4 1101 aa16.72■□□□□ 0.27
NUP88-207ENST00000573584 ATG4AQ8WYN0 398 aa16.72■□□□□ 0.27
NUP88-207ENST00000573584 N4BP2L2Q92802 583 aaPredicted RBP16.72■□□□□ 0.27
NUP88-207ENST00000573584 KIFAP3Q92845 792 aa16.72■□□□□ 0.27
NUP88-207ENST00000573584 GPRC5CQ9NQ84 441 aa16.72■□□□□ 0.27
NUP88-207ENST00000573584 CHST7Q9NS84 486 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms