RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 DDX42Q86XP3 938 aaKnown RBP eCLIP5.48□□□□□ -1.53
NUP88-202ENST00000570937 CMIPQ8IY22 773 aa5.48□□□□□ -1.53
NUP88-202ENST00000570937 ATL2Q8NHH9 583 aa5.48□□□□□ -1.53
NUP88-202ENST00000570937 AHCYL2Q96HN2 611 aaKnown RBP5.48□□□□□ -1.53
NUP88-202ENST00000570937 ZNF512Q96ME7 567 aaPredicted RBP5.48□□□□□ -1.53
NUP88-202ENST00000570937 ZNF703Q9H7S9 590 aaPredicted RBP5.48□□□□□ -1.53
NUP88-202ENST00000570937 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.48□□□□□ -1.53
NUP88-202ENST00000570937 GIT1Q9Y2X7 761 aa5.48□□□□□ -1.53
NUP88-202ENST00000570937 ANKRD50Q9ULJ7 1429 aa5.48□□□□□ -1.53
NUP88-202ENST00000570937 MTHFD2P13995 350 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 GPR3P46089 330 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 HSPA2P54652 639 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 ELAVL1Q15717 326 aaKnown RBP5.47□□□□□ -1.53
NUP88-202ENST00000570937 USP39Q53GS9 565 aaKnown RBP5.47□□□□□ -1.53
NUP88-202ENST00000570937 HTR3DQ70Z44 454 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 APBB1IPQ7Z5R6 666 aaPredicted RBP5.47□□□□□ -1.53
NUP88-202ENST00000570937 NECAB2Q7Z6G3 386 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 MDGA1Q8NFP4 955 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 SNX33Q8WV41 574 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 AUTS2Q8WXX7 1259 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 EXTL1Q92935 676 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 ARL8AQ96BM9 186 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 PDCD2LQ9BRP1 358 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 C14orf119Q9NWQ9 140 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 NCDNQ9UBB6 729 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 DPP7Q9UHL4 492 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 ATP8A1Q9Y2Q0 1164 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 EIF2AK4Q9P2K8 1649 aaKnown RBP5.47□□□□□ -1.53
NUP88-202ENST00000570937 SETD1BQ9UPS6 1966 aaKnown RBP5.47□□□□□ -1.53
NUP88-202ENST00000570937 KDM5DQ9BY66 1539 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 RRBP1Q9P2E9 1410 aaKnown RBP5.47□□□□□ -1.53
NUP88-202ENST00000570937 MROH2AA6NES4 1674 aa5.47□□□□□ -1.53
NUP88-202ENST00000570937 ADGRL2O95490 1459 aa5.46□□□□□ -1.53
NUP88-202ENST00000570937 LMTK3Q96Q04 1460 aa5.46□□□□□ -1.53
NUP88-202ENST00000570937 HOXA3O43365 443 aaPredicted RBP5.46□□□□□ -1.54
NUP88-202ENST00000570937 MFAP3LO75121 409 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 IPO13O94829 963 aaKnown RBP5.46□□□□□ -1.54
NUP88-202ENST00000570937 GYPEP15421 78 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 CTSSP25774 331 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 SCAND1P57086 179 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 DUSP2Q05923 314 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 MRPL49Q13405 166 aaKnown RBP5.46□□□□□ -1.54
NUP88-202ENST00000570937 MUM1Q2TAK8 710 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 ANO4Q32M45 955 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 MIIPQ5JXC2 388 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 METTL24Q5JXM2 366 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 CRIP3Q6Q6R5 217 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 ABHD15Q6UXT9 468 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 TMPRSS6Q8IU80 811 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 IL17DQ8TAD2 202 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 COG1Q8WTW3 980 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 TSPEARQ8WU66 669 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 ZNF503Q96F45 646 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 MENTQ9BUN1 341 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 ZNF747Q9BV97 191 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 PUS7LQ9H0K6 701 aaKnown RBP5.46□□□□□ -1.54
NUP88-202ENST00000570937 EDARQ9UNE0 448 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 PTPRKQ15262 1439 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 CROCC2H7BZ55 1655 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 RPTORQ8N122 1335 aa5.46□□□□□ -1.54
NUP88-202ENST00000570937 PZPP20742 1482 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 TNRQ92752 1358 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 C3P01024 1663 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 CLTCQ00610 1675 aaKnown RBP5.45□□□□□ -1.54
NUP88-202ENST00000570937 STC2O76061 302 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 GASTP01350 101 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 CASRP41180 1078 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 RABGGTBP53611 331 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 FOXE3Q13461 319 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 RRP1BQ14684 758 aaKnown RBP5.45□□□□□ -1.54
NUP88-202ENST00000570937 DCAF17Q5H9S7 520 aaPredicted RBP5.45□□□□□ -1.54
NUP88-202ENST00000570937 GJC2Q5T442 439 aaPredicted RBP5.45□□□□□ -1.54
NUP88-202ENST00000570937 NAIF1Q69YI7 327 aaPredicted RBP5.45□□□□□ -1.54
NUP88-202ENST00000570937 BTNL9Q6UXG8 535 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 ZNF662Q6ZS27 426 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 C1orf210Q8IVY1 113 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 LILRA3Q8N6C8 439 aaPredicted RBP5.45□□□□□ -1.54
NUP88-202ENST00000570937 OR5M3Q8NGP4 307 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 TGFBRAP1Q8WUH2 860 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 IL17RAQ96F46 866 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 QRSL1Q9H0R6 528 aaKnown RBP5.45□□□□□ -1.54
NUP88-202ENST00000570937 VPS11Q9H270 941 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 SLC5A4Q9NY91 659 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 SCOCQ9UIL1 159 aa5.45□□□□□ -1.54
NUP88-202ENST00000570937 RNF17Q9BXT8 1623 aaKnown RBP5.45□□□□□ -1.54
NUP88-202ENST00000570937 PREX1Q8TCU6 1659 aa5.44□□□□□ -1.54
NUP88-202ENST00000570937 KLRG2A4D1S0 409 aaPredicted RBP5.44□□□□□ -1.54
NUP88-202ENST00000570937 PRAMEF4O60810 478 aa5.44□□□□□ -1.54
NUP88-202ENST00000570937 PHF2O75151 1096 aa5.44□□□□□ -1.54
NUP88-202ENST00000570937 CFBP00751 764 aa5.44□□□□□ -1.54
NUP88-202ENST00000570937 MTNR1BP49286 362 aa5.44□□□□□ -1.54
NUP88-202ENST00000570937 MAN2A2P49641 1150 aa5.44□□□□□ -1.54
NUP88-202ENST00000570937 GZMKP49863 264 aa5.44□□□□□ -1.54
NUP88-202ENST00000570937 ZXDAP98168 799 aa5.44□□□□□ -1.54
NUP88-202ENST00000570937 CDK17Q00537 523 aa5.44□□□□□ -1.54
NUP88-202ENST00000570937 KLF1Q13351 362 aaPredicted RBP5.44□□□□□ -1.54
NUP88-202ENST00000570937 ADRM1Q16186 407 aa5.44□□□□□ -1.54
NUP88-202ENST00000570937 ARHGAP31Q2M1Z3 1444 aa5.44□□□□□ -1.54
NUP88-202ENST00000570937 NRN1LQ496H8 165 aa5.44□□□□□ -1.54
NUP88-202ENST00000570937 C1QL3Q5VWW1 255 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms