RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 NPAS3Q8IXF0 933 aa18.06■□□□□ 0.48
CLK3-223ENST00000568488 RNF149Q8NC42 400 aa18.06■□□□□ 0.48
CLK3-223ENST00000568488 SLC7A14Q8TBB6 771 aa18.06■□□□□ 0.48
CLK3-223ENST00000568488 DDX1Q92499 740 aaKnown RBP18.06■□□□□ 0.48
CLK3-223ENST00000568488 CEP170P1Q96L14 293 aa18.06■□□□□ 0.48
CLK3-223ENST00000568488 TRIM6Q9C030 488 aaPredicted RBP18.06■□□□□ 0.48
CLK3-223ENST00000568488 CACNG4Q9UBN1 327 aa18.06■□□□□ 0.48
CLK3-223ENST00000568488 GIT1Q9Y2X7 761 aa18.06■□□□□ 0.48
CLK3-223ENST00000568488 MRPS23Q9Y3D9 190 aaKnown RBP18.06■□□□□ 0.48
CLK3-223ENST00000568488 TDGF1P13385 188 aa18.05■□□□□ 0.48
CLK3-223ENST00000568488 AKAP5P24588 427 aa18.05■□□□□ 0.48
CLK3-223ENST00000568488 PSMC5P62195 406 aa18.05■□□□□ 0.48
CLK3-223ENST00000568488 NECTIN1Q15223 517 aa18.05■□□□□ 0.48
CLK3-223ENST00000568488 PSMD5Q16401 504 aa18.05■□□□□ 0.48
CLK3-223ENST00000568488 FAM171A1Q5VUB5 890 aa18.05■□□□□ 0.48
CLK3-223ENST00000568488 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.05■□□□□ 0.48
CLK3-223ENST00000568488 HACE1Q8IYU2 909 aa18.05■□□□□ 0.48
CLK3-223ENST00000568488 ZNF579Q8NAF0 562 aaKnown RBP18.05■□□□□ 0.48
CLK3-223ENST00000568488 HASPINQ8TF76 798 aa18.05■□□□□ 0.48
CLK3-223ENST00000568488 LMAN1LQ9HAT1 526 aa18.05■□□□□ 0.48
CLK3-223ENST00000568488 KLK14Q9P0G3 267 aa18.05■□□□□ 0.48
CLK3-223ENST00000568488 DNMT3BQ9UBC3 853 aaKnown RBP18.05■□□□□ 0.48
CLK3-223ENST00000568488 ATRXP46100 2492 aa18.05■□□□□ 0.48
CLK3-223ENST00000568488 SF3B1O75533 1304 aaKnown RBP eCLIP18.04■□□□□ 0.48
CLK3-223ENST00000568488 MAN2B1O00754 1011 aa18.04■□□□□ 0.48
CLK3-223ENST00000568488 TSPAN1O60635 241 aa18.04■□□□□ 0.48
CLK3-223ENST00000568488 ECI2O75521 394 aa18.04■□□□□ 0.48
CLK3-223ENST00000568488 AXLP30530 894 aa18.04■□□□□ 0.48
CLK3-223ENST00000568488 HOXA9P31269 272 aa18.04■□□□□ 0.48
CLK3-223ENST00000568488 HSP90AA2PQ14568 343 aaPredicted RBP18.04■□□□□ 0.48
CLK3-223ENST00000568488 AXDND1Q5T1B0 1012 aaPredicted RBP18.04■□□□□ 0.48
CLK3-223ENST00000568488 EXOC8Q8IYI6 725 aa18.04■□□□□ 0.48
CLK3-223ENST00000568488 LNX1Q8TBB1 728 aaPredicted RBP18.04■□□□□ 0.48
CLK3-223ENST00000568488 TTPALQ9BTX7 342 aa18.04■□□□□ 0.48
CLK3-223ENST00000568488 CSRNP2Q9H175 543 aa18.04■□□□□ 0.48
CLK3-223ENST00000568488 CHRDQ9H2X0 955 aa18.04■□□□□ 0.48
CLK3-223ENST00000568488 KCNH3Q9ULD8 1083 aa18.04■□□□□ 0.48
CLK3-223ENST00000568488 SHISA7A6NL88 538 aa18.03■□□□□ 0.48
CLK3-223ENST00000568488 ADAM12O43184 909 aa18.03■□□□□ 0.48
CLK3-223ENST00000568488 PMLP29590 882 aa18.03■□□□□ 0.48
CLK3-223ENST00000568488 CCR3P51677 355 aa18.03■□□□□ 0.48
CLK3-223ENST00000568488 EXOSC10Q01780 885 aaKnown RBP18.03■□□□□ 0.48
CLK3-223ENST00000568488 AKAP17AQ02040 695 aaKnown RBP18.03■□□□□ 0.48
CLK3-223ENST00000568488 TANGO2Q6ICL3 276 aa18.03■□□□□ 0.48
CLK3-223ENST00000568488 DHX32Q7L7V1 743 aaKnown RBP18.03■□□□□ 0.48
CLK3-223ENST00000568488 TBCKQ8TEA7 893 aa18.03■□□□□ 0.48
CLK3-223ENST00000568488 PAAF1Q9BRP4 392 aa18.03■□□□□ 0.48
CLK3-223ENST00000568488 NXF3Q9H4D5 531 aaKnown RBP18.03■□□□□ 0.48
CLK3-223ENST00000568488 BRD9Q9H8M2 597 aa18.03■□□□□ 0.48
CLK3-223ENST00000568488 PARP2Q9UGN5 583 aa18.03■□□□□ 0.48
CLK3-223ENST00000568488 TDRD15B5MCY1 1934 aaKnown RBP18.02■□□□□ 0.48
CLK3-223ENST00000568488 CCDC196A0A1B0GTZ2 297 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 CHURC1-FNTBB4DL54 471 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 INO80B-WBP1J3KQ70 363 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 ASAP2O43150 1006 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 HRO43593 1189 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 QARSP47897 775 aaKnown RBP18.02■□□□□ 0.48
CLK3-223ENST00000568488 CXCL12P48061 93 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 FNTBP49356 437 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 FGD1P98174 961 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 GRIK3Q13003 919 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 SRSF5Q13243 272 aaKnown RBP18.02■□□□□ 0.48
CLK3-223ENST00000568488 GRM2Q14416 872 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 Q4G0T1 1027 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 AASDHQ4L235 1098 aaPredicted RBP18.02■□□□□ 0.48
CLK3-223ENST00000568488 B3GNT9Q6UX72 402 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 FERMT3Q86UX7 667 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 GSTCDQ8NEC7 633 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 TCP11Q8WWU5 503 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 PIK3R5Q8WYR1 880 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 CCDC51Q96ER9 411 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 SLKQ9H2G2 1235 aaPredicted RBP18.02■□□□□ 0.48
CLK3-223ENST00000568488 DHX33Q9H6R0 707 aaKnown RBP18.02■□□□□ 0.48
CLK3-223ENST00000568488 ANO2Q9NQ90 1003 aa18.02■□□□□ 0.48
CLK3-223ENST00000568488 CASTOR2A6NHX0 329 aa18.01■□□□□ 0.47
CLK3-223ENST00000568488 PRPF3O43395 683 aaKnown RBP18.01■□□□□ 0.47
CLK3-223ENST00000568488 TDP2O95551 362 aa18.01■□□□□ 0.47
CLK3-223ENST00000568488 HOXB3P14651 431 aaPredicted RBP18.01■□□□□ 0.47
CLK3-223ENST00000568488 OR1D2P34982 312 aa18.01■□□□□ 0.47
CLK3-223ENST00000568488 RFC5P40937 340 aa18.01■□□□□ 0.47
CLK3-223ENST00000568488 SATB1Q01826 763 aa18.01■□□□□ 0.47
CLK3-223ENST00000568488 UVSSAQ2YD98 709 aa18.01■□□□□ 0.47
CLK3-223ENST00000568488 RNF20Q5VTR2 975 aa18.01■□□□□ 0.47
CLK3-223ENST00000568488 CDR2LQ86X02 465 aaPredicted RBP18.01■□□□□ 0.47
CLK3-223ENST00000568488 FAM3CQ92520 227 aa18.01■□□□□ 0.47
CLK3-223ENST00000568488 DNASE1L2Q92874 299 aa18.01■□□□□ 0.47
CLK3-223ENST00000568488 ELSPBP1Q96BH3 223 aa18.01■□□□□ 0.47
CLK3-223ENST00000568488 GDE1Q9NZC3 331 aa18.01■□□□□ 0.47
CLK3-223ENST00000568488 VPS54Q9P1Q0 977 aa18.01■□□□□ 0.47
CLK3-223ENST00000568488 FOXD2O60548 495 aaPredicted RBP18■□□□□ 0.47
CLK3-223ENST00000568488 DKC1O60832 514 aaKnown RBP eCLIP18■□□□□ 0.47
CLK3-223ENST00000568488 NPTXRO95502 500 aa18■□□□□ 0.47
CLK3-223ENST00000568488 HEATR6Q6AI08 1181 aaKnown RBP18■□□□□ 0.47
CLK3-223ENST00000568488 MAMSTRQ6ZN01 415 aa18■□□□□ 0.47
CLK3-223ENST00000568488 ZNF687Q8N1G0 1237 aa18■□□□□ 0.47
CLK3-223ENST00000568488 CCDC148Q8NFR7 591 aa18■□□□□ 0.47
CLK3-223ENST00000568488 IER2Q9BTL4 223 aa18■□□□□ 0.47
CLK3-223ENST00000568488 TRMT61BQ9BVS5 477 aaKnown RBP18■□□□□ 0.47
CLK3-223ENST00000568488 EML1O00423 815 aa17.99■□□□□ 0.47
CLK3-223ENST00000568488 KIF4AO95239 1232 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms