RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	TANGO2	Q6ICL3	276 aa		13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	TEX2	Q8IWB9	1127 aa		13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	COL26A1	Q96A83	441 aa		13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	MCRS1	Q96EZ8	462 aa		13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	CLSTN3	Q9BQT9	956 aa		13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	EIF2A	Q9BY44	585 aa	Known RBP	13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	LMAN1L	Q9HAT1	526 aa		13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	DNMT3B	Q9UBC3	853 aa	Known RBP	13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	IPP	Q9Y573	584 aa		13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	RBM8A	Q9Y5S9	174 aa	Known RBP	13.18	□□□□□ -0.3
CLK3-222	ENST00000568232	DDX11L8	A8MPP1	907 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	ADAM12	O43184	909 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	EDIL3	O43854	480 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	ECI2	O75521	394 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	IGHD	P01880	384 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	SRGAP2C	P0DJJ0	459 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	CHML	P26374	656 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	HOXC13	P31276	330 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	GAS6	Q14393	721 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	PPP2R5D	Q14738	602 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	XKR3	Q5GH77	459 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	LIN9	Q5TKA1	542 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	UNQ6494/PRO21346	Q6UXR6	183 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	APOL6	Q9BWW8	343 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	GLT8D2	Q9H1C3	349 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	UBN1	Q9NPG3	1134 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	ADAM28	Q9UKQ2	775 aa		13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	MTCL1	Q9Y4B5	1905 aa	Known RBP	13.17	□□□□□ -0.3
CLK3-222	ENST00000568232	FASN	P49327	2511 aa	Known RBP	13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	PKD1L2	Q7Z442	2459 aa		13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	NRG2	O14511	850 aa	Predicted RBP	13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	GAS7	O60861	476 aa		13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	NR1I2	O75469	434 aa		13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	CIITA	P33076	1130 aa		13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	CCR3	P51677	355 aa		13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	GRM2	Q14416	872 aa		13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	PABPC1L	Q4VXU2	614 aa	Known RBP	13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	PLA2G4F	Q68DD2	849 aa		13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	HEATR6	Q6AI08	1181 aa	Known RBP	13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	FAM160A2	Q8N612	972 aa	Predicted RBP	13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	EXOC6	Q8TAG9	804 aa		13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	SLC7A14	Q8TBB6	771 aa		13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	HASPIN	Q8TF76	798 aa		13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	PRPF31	Q8WWY3	499 aa	Known RBP	13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	RUFY2	Q8WXA3	655 aa		13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	PAAF1	Q9BRP4	392 aa		13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	COL4A3BP	Q9Y5P4	624 aa		13.16	□□□□□ -0.3
CLK3-222	ENST00000568232	hCG_1984214	I3L0E3	225 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	AXIN1	O15169	862 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	SGSM2	O43147	1006 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	XYLB	O75191	536 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	TADA2A	O75478	443 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	KCNK5	O95279	499 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	SPINK2	P20155	84 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	SFN	P31947	248 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	CXCL12	P48061	93 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	JAK3	P52333	1124 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	LIMK1	P53667	647 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	CREM	Q03060	361 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	SLC5A9	Q2M3M2	681 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	LRCH2	Q5VUJ6	765 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	ANO5	Q75V66	913 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	MIER3	Q7Z3K6	550 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	SGMS1	Q86VZ5	419 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	CEP57	Q86XR8	500 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	GPR65	Q8IYL9	337 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	ZNF713	Q8N859	430 aa	Predicted RBP	13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	CNNM3	Q8NE01	707 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	GSTCD	Q8NEC7	633 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	LNX1	Q8TBB1	728 aa	Predicted RBP	13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	FAM3C	Q92520	227 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	TMEM143	Q96AN5	459 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	CPB2	Q96IY4	423 aa		13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	MRPS23	Q9Y3D9	190 aa	Known RBP	13.15	□□□□□ -0.3
CLK3-222	ENST00000568232	SETX	Q7Z333	2677 aa	Known RBP	13.15	□□□□□ -0.31
CLK3-222	ENST00000568232	DSP	P15924	2871 aa	Known RBP	13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	MAN2B1	O00754	1011 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	CEBPB	P17676	345 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	AKAP5	P24588	427 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	HOXA9	P31269	272 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	NPEPPS	P55786	919 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	PSMD5	Q16401	504 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	RTN1	Q16799	776 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	STPG1	Q5TH74	334 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	APOA5	Q6Q788	366 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	SYNE3	Q6ZMZ3	975 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	SRGAP1	Q7Z6B7	1085 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	KDF1	Q8NAX2	398 aa	Predicted RBP	13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	SLC5A5	Q92911	643 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	CCDC136	Q96JN2	1154 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	RIT2	Q99578	217 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	TEKT3	Q9BXF9	490 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	ARRDC1-AS1	Q9H2J1	176 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	RWDD1	Q9H446	243 aa	Predicted RBP	13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	BRD9	Q9H8M2	597 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	RBM28	Q9NW13	759 aa	Known RBP	13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	C2orf42	Q9NWW7	574 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	BRPF3	Q9ULD4	1205 aa		13.14	□□□□□ -0.31
CLK3-222	ENST00000568232	KCNH3	Q9ULD8	1083 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms