RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 TADA2AO75478 443 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 PRKCBP05771 671 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 TOB1P50616 345 aaPredicted RBP17.75■□□□□ 0.43
CLN3-229ENST00000567963 TUSC3Q13454 348 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 HSP90AA2PQ14568 343 aaPredicted RBP17.75■□□□□ 0.43
CLN3-229ENST00000567963 PPP2R5AQ15172 486 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 TMEM132AQ24JP5 1023 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 C8orf34Q49A92 452 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 ELMSAN1Q6PJG2 1045 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 CYP26C1Q6V0L0 522 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 DEPTORQ8TB45 409 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 HDAC7Q8WUI4 952 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 ADPGKQ9BRR6 497 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 RHOBTB2Q9BYZ6 727 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 BHMT2Q9H2M3 363 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 POLD4Q9HCU8 107 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.75■□□□□ 0.43
CLN3-229ENST00000567963 FNIP2Q9P278 1114 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 CACNG4Q9UBN1 327 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 KIAA1024Q9UPX6 916 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 USP20Q9Y2K6 914 aa17.75■□□□□ 0.43
CLN3-229ENST00000567963 PTGESO14684 152 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 EDN1P05305 212 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 THP07101 528 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 SPATA31D3P0C874 917 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 MYBP10242 640 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 PTGDRQ13258 359 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 SPATA31D4Q6ZUB0 917 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 PALB2Q86YC2 1186 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 IGSF22Q8N9C0 903 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 RIN2Q8WYP3 895 aaPredicted RBP17.74■□□□□ 0.43
CLN3-229ENST00000567963 IFT74Q96LB3 600 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 PHOX2BQ99453 314 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 CXCL16Q9H2A7 254 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 PLEKHA4Q9H4M7 779 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 WDR6Q9NNW5 1121 aaKnown RBP17.74■□□□□ 0.43
CLN3-229ENST00000567963 PCDHB6Q9Y5E3 794 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 STK24Q9Y6E0 443 aa17.74■□□□□ 0.43
CLN3-229ENST00000567963 TGM5O43548 720 aa17.73■□□□□ 0.43
CLN3-229ENST00000567963 RFPL2O75678 378 aa17.73■□□□□ 0.43
CLN3-229ENST00000567963 RECQL4O94761 1208 aa17.73■□□□□ 0.43
CLN3-229ENST00000567963 PAPLNO95428 1278 aa17.73■□□□□ 0.43
CLN3-229ENST00000567963 LIG1P18858 919 aa17.73■□□□□ 0.43
CLN3-229ENST00000567963 EFNA5P52803 228 aa17.73■□□□□ 0.43
CLN3-229ENST00000567963 NAB2Q15742 525 aa17.73■□□□□ 0.43
CLN3-229ENST00000567963 LILRA6Q6PI73 481 aa17.73■□□□□ 0.43
CLN3-229ENST00000567963 KIFAP3Q92845 792 aa17.73■□□□□ 0.43
CLN3-229ENST00000567963 KIFC3Q9BVG8 833 aa17.73■□□□□ 0.43
CLN3-229ENST00000567963 DDX19AQ9NUU7 478 aaKnown RBP17.73■□□□□ 0.43
CLN3-229ENST00000567963 DAXXQ9UER7 740 aaPredicted RBP17.73■□□□□ 0.43
CLN3-229ENST00000567963 SF3B1O75533 1304 aaKnown RBP eCLIP17.73■□□□□ 0.433e-9■■■■■ 164.7
CLN3-229ENST00000567963 CASTOR2A6NHX0 329 aa17.72■□□□□ 0.43
CLN3-229ENST00000567963 N4BP1O75113 896 aaKnown RBP17.72■□□□□ 0.43
CLN3-229ENST00000567963 RPL17P18621 184 aaKnown RBP17.72■□□□□ 0.43
CLN3-229ENST00000567963 NUBP1P53384 320 aa17.72■□□□□ 0.43
CLN3-229ENST00000567963 CREMQ03060 361 aa17.72■□□□□ 0.43
CLN3-229ENST00000567963 EEF1DP3Q658K8 133 aa17.72■□□□□ 0.43
CLN3-229ENST00000567963 GLYCTKQ8IVS8 523 aa17.72■□□□□ 0.43
CLN3-229ENST00000567963 HASPINQ8TF76 798 aa17.72■□□□□ 0.43
CLN3-229ENST00000567963 ZNF707Q96C28 371 aaPredicted RBP17.72■□□□□ 0.43
CLN3-229ENST00000567963 RAB34Q9BZG1 259 aa17.72■□□□□ 0.43
CLN3-229ENST00000567963 NT5C3AQ9H0P0 336 aa17.72■□□□□ 0.43
CLN3-229ENST00000567963 KCNK12Q9HB15 430 aa17.72■□□□□ 0.43
CLN3-229ENST00000567963 MYO15AQ9UKN7 3530 aa17.72■□□□□ 0.43
CLN3-229ENST00000567963 LAD1O00515 517 aa17.71■□□□□ 0.43
CLN3-229ENST00000567963 KIF4AO95239 1232 aa17.71■□□□□ 0.43
CLN3-229ENST00000567963 TDGQ13569 410 aa17.71■□□□□ 0.43
CLN3-229ENST00000567963 DCAF4L1Q3SXM0 396 aa17.71■□□□□ 0.43
CLN3-229ENST00000567963 RTP2Q5QGT7 225 aa17.71■□□□□ 0.43
CLN3-229ENST00000567963 NT5DC1Q5TFE4 455 aa17.71■□□□□ 0.43
CLN3-229ENST00000567963 SNX29Q8TEQ0 813 aa17.71■□□□□ 0.43
CLN3-229ENST00000567963 SMG7Q92540 1137 aaKnown RBP17.71■□□□□ 0.43
CLN3-229ENST00000567963 STAMQ92783 540 aa17.71■□□□□ 0.43
CLN3-229ENST00000567963 GDAQ9Y2T3 454 aa17.71■□□□□ 0.43
CLN3-229ENST00000567963 E9PMD0 336 aa17.7■□□□□ 0.42
CLN3-229ENST00000567963 K7ERI5 159 aa17.7■□□□□ 0.42
CLN3-229ENST00000567963 IL17AQ16552 155 aa17.7■□□□□ 0.42
CLN3-229ENST00000567963 ATF7IP2Q5U623 682 aa17.7■□□□□ 0.42
CLN3-229ENST00000567963 FAM171A1Q5VUB5 890 aa17.7■□□□□ 0.42
CLN3-229ENST00000567963 PRSS55Q6UWB4 352 aaPredicted RBP17.7■□□□□ 0.42
CLN3-229ENST00000567963 TTPALQ9BTX7 342 aa17.7■□□□□ 0.42
CLN3-229ENST00000567963 ZDHHC7Q9NXF8 308 aa17.7■□□□□ 0.42
CLN3-229ENST00000567963 IGSF9Q9P2J2 1179 aa17.7■□□□□ 0.42
CLN3-229ENST00000567963 DNM3Q9UQ16 869 aa17.7■□□□□ 0.42
CLN3-229ENST00000567963 CLUHO75153 1309 aa17.7■□□□□ 0.42
CLN3-229ENST00000567963 CDC25AP30304 524 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 GBP2P32456 591 aaPredicted RBP17.69■□□□□ 0.42
CLN3-229ENST00000567963 PRPHP41219 470 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 KRT79Q5XKE5 535 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 CEP57Q86XR8 500 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 TMEM105Q8N8V8 129 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 LNX1Q8TBB1 728 aaPredicted RBP17.69■□□□□ 0.42
CLN3-229ENST00000567963 PIK3R5Q8WYR1 880 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 CLSTN3Q9BQT9 956 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 PRKD2Q9BZL6 878 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 IRF2BPLQ9H1B7 796 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 PIDD1Q9HB75 910 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 DUSP12Q9UNI6 340 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 CCDC169A6NNP5 214 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 PP2D1A8MPX8 630 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms