RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 STRN3Q13033 797 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 GRM1Q13255 1194 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 DGKZQ13574 1117 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 EMC2Q15006 297 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 STXBP2Q15833 593 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 CLEC16AQ2KHT3 1053 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 ZACNQ401N2 412 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 DUPD1Q68J44 220 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 ACAD10Q6JQN1 1059 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 SWSAP1Q6NVH7 229 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 SLC39A4Q6P5W5 647 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 SV2AQ7L0J3 742 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.72□□□□□ -1.33
CLN3-223ENST00000566472 SAMD7Q7Z3H4 446 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 DEFB132Q7Z7B7 95 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 SPATS2Q86XZ4 545 aaKnown RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 DNAAF5Q86Y56 855 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 PALB2Q86YC2 1186 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 CCDC60Q8IWA6 550 aaPredicted RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 C12orf50Q8NA57 414 aaPredicted RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 C3orf20Q8ND61 904 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 ZNF564Q8TBZ8 553 aaPredicted RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 PSPC1Q8WXF1 523 aaKnown RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 DDX1Q92499 740 aaKnown RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 SEMA4DQ92854 862 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 KAT5Q92993 513 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 ARL8AQ96BM9 186 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 ZNF653Q96CK0 615 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 KLRG1Q96E93 195 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 SAAL1Q96ER3 474 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 PCDHB18PQ96TA0 734 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 ERP44Q9BS26 406 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 AP1M1Q9BXS5 423 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 NIFKQ9BYG3 293 aaKnown RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 PORCNQ9H237 461 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 TMEM134Q9H6X4 195 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 TMBIM4Q9HC24 238 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 C1orf112Q9NSG2 853 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 PCYOX1Q9UHG3 505 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 LCMT1Q9UIC8 334 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 MTUS1Q9ULD2 1270 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 PLAAQ9Y263 795 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 PCDHA3Q9Y5H8 950 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 MAFBQ9Y5Q3 323 aaPredicted RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 GRIN2DO15399 1336 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 ATXN2Q99700 1313 aaKnown RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 A0A0G2JMZ2 1700 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 TMEM150BA6NC51 233 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 H0YGN5 161 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 TTI1O43156 1089 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 CYP26A1O43174 497 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 GAS2O43903 313 aaKnown RBP6.71□□□□□ -1.34
CLN3-223ENST00000566472 MMEP08473 750 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 NUDT17P0C025 328 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 MYZAPP0CAP1 466 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 NR1D1P20393 614 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 COMTP21964 271 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 EDNRBP24530 442 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 TBXAS1P24557 533 aaPredicted RBP6.71□□□□□ -1.34
CLN3-223ENST00000566472 MAN1A1P33908 653 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 ARL2P36404 184 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 USP8P40818 1118 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 PEX5P50542 639 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 IRAK1P51617 712 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 POLGP54098 1239 aaPredicted RBP6.71□□□□□ -1.34
CLN3-223ENST00000566472 RWDD2BP57060 319 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 RNASE9P60153 205 aaKnown RBP6.71□□□□□ -1.34
CLN3-223ENST00000566472 GNGT1P63211 74 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 PTP4A2Q12974 167 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 PRPF4BQ13523 1007 aaKnown RBP6.71□□□□□ -1.34
CLN3-223ENST00000566472 UAP1Q16222 522 aaPredicted RBP6.71□□□□□ -1.34
CLN3-223ENST00000566472 WDR44Q5JSH3 913 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 ANGEL2Q5VTE6 544 aaKnown RBP6.71□□□□□ -1.34
CLN3-223ENST00000566472 FAM160B1Q5W0V3 765 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 ZPBP2Q6X784 338 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 LBX2Q6XYB7 198 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 SYDE1Q6ZW31 735 aaPredicted RBP6.71□□□□□ -1.34
CLN3-223ENST00000566472 CYFIP1Q7L576 1253 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 TAS1R3Q7RTX0 852 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 TMC3Q7Z5M5 1100 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 SRLQ86TD4 932 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 HOOK3Q86VS8 718 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 SLC13A5Q86YT5 568 aaPredicted RBP6.71□□□□□ -1.34
CLN3-223ENST00000566472 JAMLQ86YT9 394 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 CCDC125Q86Z20 511 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 RIOX2Q8IUF8 465 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 EXOC8Q8IYI6 725 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.71□□□□□ -1.34
CLN3-223ENST00000566472 DEPTORQ8TB45 409 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 TAS1R2Q8TE23 839 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 ATP8B4Q8TF62 1192 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 ALG3Q92685 438 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 SLCO2A1Q92959 643 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 CCDC127Q96BQ5 260 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 BICD1Q96G01 975 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 WNK4Q96J92 1243 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 FAM167AQ96KS9 214 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 FNBP1Q96RU3 617 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 FMO2Q99518 471 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 MPHOSPH6Q99547 160 aaKnown RBP6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms