RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 MRE11P49959 708 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 HSP90AA2PQ14568 343 aaPredicted RBP16.45■□□□□ 0.22
CLN3-222ENST00000566083 BHMT2Q9H2M3 363 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 PDZD7Q9H5P4 517 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 ZDHHC7Q9NXF8 308 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 IGSF9Q9P2J2 1179 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 DNM3Q9UQ16 869 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 CCDC195A0A1B0GUA6 201 aa16.44■□□□□ 0.22
CLN3-222ENST00000566083 ST18O60284 1047 aa16.44■□□□□ 0.22
CLN3-222ENST00000566083 PAPLNO95428 1278 aa16.44■□□□□ 0.22
CLN3-222ENST00000566083 BRD1O95696 1058 aa16.44■□□□□ 0.22
CLN3-222ENST00000566083 PRPHP41219 470 aa16.44■□□□□ 0.22
CLN3-222ENST00000566083 KRT79Q5XKE5 535 aa16.44■□□□□ 0.22
CLN3-222ENST00000566083 TAS1R1Q7RTX1 841 aa16.44■□□□□ 0.22
CLN3-222ENST00000566083 CDR2LQ86X02 465 aaPredicted RBP16.44■□□□□ 0.22
CLN3-222ENST00000566083 IGSF22Q8N9C0 903 aa16.44■□□□□ 0.22
CLN3-222ENST00000566083 NXPE3Q969Y0 559 aa16.44■□□□□ 0.22
CLN3-222ENST00000566083 CCDC113Q9H0I3 377 aa16.44■□□□□ 0.22
CLN3-222ENST00000566083 C17orf75Q9HAS0 396 aa16.44■□□□□ 0.22
CLN3-222ENST00000566083 WDR6Q9NNW5 1121 aaKnown RBP16.44■□□□□ 0.22
CLN3-222ENST00000566083 KLK14Q9P0G3 267 aa16.44■□□□□ 0.22
CLN3-222ENST00000566083 K7ERI5 159 aa16.43■□□□□ 0.22
CLN3-222ENST00000566083 PTGDRQ13258 359 aa16.43■□□□□ 0.22
CLN3-222ENST00000566083 TDGQ13569 410 aa16.43■□□□□ 0.22
CLN3-222ENST00000566083 RABEP1Q15276 862 aa16.43■□□□□ 0.22
CLN3-222ENST00000566083 KANK3Q6NY19 840 aa16.43■□□□□ 0.22
CLN3-222ENST00000566083 C4orf32Q8N8J7 132 aa16.43■□□□□ 0.22
CLN3-222ENST00000566083 RIN2Q8WYP3 895 aaPredicted RBP16.43■□□□□ 0.22
CLN3-222ENST00000566083 GPR62Q9BZJ7 368 aa16.43■□□□□ 0.22
CLN3-222ENST00000566083 MFSD1Q9H3U5 465 aa16.43■□□□□ 0.22
CLN3-222ENST00000566083 SNTG2Q9NY99 539 aa16.43■□□□□ 0.22
CLN3-222ENST00000566083 KIAA1024Q9UPX6 916 aa16.43■□□□□ 0.22
CLN3-222ENST00000566083 RECQL4O94761 1208 aa16.42■□□□□ 0.22
CLN3-222ENST00000566083 RILPL1Q5EBL4 403 aa16.42■□□□□ 0.22
CLN3-222ENST00000566083 IER5LQ5T953 404 aa16.42■□□□□ 0.22
CLN3-222ENST00000566083 DTHD1Q6ZMT9 781 aa16.42■□□□□ 0.22
CLN3-222ENST00000566083 PRSS33Q8NF86 280 aa16.42■□□□□ 0.22
CLN3-222ENST00000566083 SNX29Q8TEQ0 813 aa16.42■□□□□ 0.22
CLN3-222ENST00000566083 BSNDQ8WZ55 320 aa16.42■□□□□ 0.22
CLN3-222ENST00000566083 SMG7Q92540 1137 aaKnown RBP16.42■□□□□ 0.22
CLN3-222ENST00000566083 DRC1Q96MC2 740 aa16.42■□□□□ 0.22
CLN3-222ENST00000566083 TTPALQ9BTX7 342 aa16.42■□□□□ 0.22
CLN3-222ENST00000566083 TIPINQ9BVW5 301 aa16.42■□□□□ 0.22
CLN3-222ENST00000566083 PIDD1Q9HB75 910 aa16.42■□□□□ 0.22
CLN3-222ENST00000566083 DDX19AQ9NUU7 478 aaKnown RBP16.42■□□□□ 0.22
CLN3-222ENST00000566083 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.42■□□□□ 0.22
CLN3-222ENST00000566083 RBM19Q9Y4C8 960 aaKnown RBP16.42■□□□□ 0.22
CLN3-222ENST00000566083 TGM5O43548 720 aa16.41■□□□□ 0.22
CLN3-222ENST00000566083 ASGR2P07307 311 aa16.41■□□□□ 0.22
CLN3-222ENST00000566083 CLCN5P51795 746 aa16.41■□□□□ 0.22
CLN3-222ENST00000566083 DMP1Q13316 513 aaPredicted RBP16.41■□□□□ 0.22
CLN3-222ENST00000566083 ATF7IP2Q5U623 682 aa16.41■□□□□ 0.22
CLN3-222ENST00000566083 RTL10Q7L3V2 364 aa16.41■□□□□ 0.22
CLN3-222ENST00000566083 PIK3R5Q8WYR1 880 aa16.41■□□□□ 0.22
CLN3-222ENST00000566083 UROC1Q96N76 676 aa16.41■□□□□ 0.22
CLN3-222ENST00000566083 KIF2CQ99661 725 aa16.41■□□□□ 0.22
CLN3-222ENST00000566083 TMEM134Q9H6X4 195 aa16.41■□□□□ 0.22
CLN3-222ENST00000566083 UPF2Q9HAU5 1272 aaKnown RBP16.41■□□□□ 0.22
CLN3-222ENST00000566083 TOPORSQ9NS56 1045 aaPredicted RBP16.41■□□□□ 0.22
CLN3-222ENST00000566083 TNFSF13BQ9Y275 285 aa16.41■□□□□ 0.22
CLN3-222ENST00000566083 ZFP37Q9Y6Q3 630 aaPredicted RBP16.41■□□□□ 0.22
CLN3-222ENST00000566083 CLUHO75153 1309 aa16.4■□□□□ 0.22
CLN3-222ENST00000566083 TRAPPC3O43617 180 aa16.4■□□□□ 0.22
CLN3-222ENST00000566083 LIG1P18858 919 aa16.4■□□□□ 0.22
CLN3-222ENST00000566083 YARSP54577 528 aaKnown RBP16.4■□□□□ 0.22
CLN3-222ENST00000566083 ASTLQ6HA08 431 aaPredicted RBP16.4■□□□□ 0.22
CLN3-222ENST00000566083 LILRA6Q6PI73 481 aa16.4■□□□□ 0.22
CLN3-222ENST00000566083 PALB2Q86YC2 1186 aa16.4■□□□□ 0.22
CLN3-222ENST00000566083 PRKD2Q9BZL6 878 aa16.4■□□□□ 0.22
CLN3-222ENST00000566083 NT5C3AQ9H0P0 336 aa16.4■□□□□ 0.22
CLN3-222ENST00000566083 KCNK12Q9HB15 430 aa16.4■□□□□ 0.22
CLN3-222ENST00000566083 SLC38A7Q9NVC3 462 aa16.4■□□□□ 0.22
CLN3-222ENST00000566083 EPS15L1Q9UBC2 864 aa16.4■□□□□ 0.22
CLN3-222ENST00000566083 DUSP12Q9UNI6 340 aa16.4■□□□□ 0.22
CLN3-222ENST00000566083 MTCL1Q9Y4B5 1905 aaKnown RBP16.4■□□□□ 0.22
CLN3-222ENST00000566083 DENND4AQ7Z401 1863 aa16.4■□□□□ 0.22
CLN3-222ENST00000566083 PTPRZ1P23471 2315 aaPredicted RBP16.39■□□□□ 0.21
CLN3-222ENST00000566083 CASTOR2A6NHX0 329 aa16.39■□□□□ 0.21
CLN3-222ENST00000566083 F8W810 466 aa16.39■□□□□ 0.21
CLN3-222ENST00000566083 TMEM189-UBE2V1I3L0A0 370 aa16.39■□□□□ 0.21
CLN3-222ENST00000566083 PTGESO14684 152 aa16.39■□□□□ 0.21
CLN3-222ENST00000566083 ZMYND10O75800 440 aa16.39■□□□□ 0.21
CLN3-222ENST00000566083 HNRNPA1P09651 372 aaKnown RBP eCLIP16.39■□□□□ 0.21
CLN3-222ENST00000566083 GBP2P32456 591 aaPredicted RBP16.39■□□□□ 0.21
CLN3-222ENST00000566083 TOB1P50616 345 aaPredicted RBP16.39■□□□□ 0.21
CLN3-222ENST00000566083 VCPP55072 806 aaKnown RBP16.39■□□□□ 0.21
CLN3-222ENST00000566083 TCF15Q12870 199 aa16.39■□□□□ 0.21
CLN3-222ENST00000566083 C8orf34Q49A92 452 aa16.39■□□□□ 0.21
CLN3-222ENST00000566083 LIN9Q5TKA1 542 aa16.39■□□□□ 0.21
CLN3-222ENST00000566083 FAM171A1Q5VUB5 890 aa16.39■□□□□ 0.21
CLN3-222ENST00000566083 DCLRE1AQ6PJP8 1040 aa16.39■□□□□ 0.21
CLN3-222ENST00000566083 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.39■□□□□ 0.21
CLN3-222ENST00000566083 CCDC94Q9BW85 323 aaPredicted RBP16.39■□□□□ 0.21
CLN3-222ENST00000566083 MRPL4Q9BYD3 311 aaKnown RBP16.39■□□□□ 0.21
CLN3-222ENST00000566083 PCDHB6Q9Y5E3 794 aa16.39■□□□□ 0.21
CLN3-222ENST00000566083 TTLL13PA6NNM8 815 aa16.38■□□□□ 0.21
CLN3-222ENST00000566083 CCDC169A6NNP5 214 aa16.38■□□□□ 0.21
CLN3-222ENST00000566083 GALR2O43603 387 aaPredicted RBP16.38■□□□□ 0.21
CLN3-222ENST00000566083 HOXA9P31269 272 aa16.38■□□□□ 0.21
CLN3-222ENST00000566083 MCM2P49736 904 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 126.2 ms