RNA–Protein interactions for RNA: ENST00000565662.5

USB1-211, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 719 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-211ENST00000565662 CCDC39Q9UFE4 941 aa18.38■□□□□ 0.53
USB1-211ENST00000565662 PRG3Q9Y2Y8 225 aaPredicted RBP18.38■□□□□ 0.53
USB1-211ENST00000565662 HCN4Q9Y3Q4 1203 aa18.38■□□□□ 0.53
USB1-211ENST00000565662 PP2D1A8MPX8 630 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 PRR33A8MZF0 331 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 LOC730098B7Z3J9 87 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 TMEM189-UBE2V1I3L0A0 370 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 TRAPPC3O43617 180 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 BRD1O95696 1058 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 SSBP05455 408 aaKnown RBP eCLIP18.37■□□□□ 0.53
USB1-211ENST00000565662 LIG1P18858 919 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 AKAP5P24588 427 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 GRM5P41594 1212 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 SLC12A3P55017 1021 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 SF3A1Q15459 793 aaKnown RBP18.37■□□□□ 0.53
USB1-211ENST00000565662 LLGL2Q6P1M3 1020 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 FUT10Q6P4F1 479 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 MPZL3Q6UWV2 235 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 VN1R2Q8NFZ6 395 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 SNX21Q969T3 373 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 RUSC1Q9BVN2 902 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 CCSER1Q9C0I3 900 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 S1PR5Q9H228 398 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 RNF39Q9H2S5 420 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 MARCH5Q9NX47 278 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 STK17AQ9UEE5 414 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 USTQ9Y2C2 406 aa18.37■□□□□ 0.53
USB1-211ENST00000565662 TADA2AO75478 443 aa18.36■□□□□ 0.53
USB1-211ENST00000565662 TOM1L1O75674 476 aa18.36■□□□□ 0.53
USB1-211ENST00000565662 CDC25AP30304 524 aa18.36■□□□□ 0.53
USB1-211ENST00000565662 ATAT1Q5SQI0 421 aa18.36■□□□□ 0.53
USB1-211ENST00000565662 SYCE2Q6PIF2 218 aa18.36■□□□□ 0.53
USB1-211ENST00000565662 HSCBQ8IWL3 235 aa18.36■□□□□ 0.53
USB1-211ENST00000565662 PLCD3Q8N3E9 789 aa18.36■□□□□ 0.53
USB1-211ENST00000565662 GSTCDQ8NEC7 633 aa18.36■□□□□ 0.53
USB1-211ENST00000565662 CMASQ8NFW8 434 aaPredicted RBP18.36■□□□□ 0.53
USB1-211ENST00000565662 BCL7CQ8WUZ0 217 aaPredicted RBP18.36■□□□□ 0.53
USB1-211ENST00000565662 TSPAN18Q96SJ8 248 aa18.36■□□□□ 0.53
USB1-211ENST00000565662 ACO2Q99798 780 aaKnown RBP18.36■□□□□ 0.53
USB1-211ENST00000565662 PLEKHA4Q9H4M7 779 aa18.36■□□□□ 0.53
USB1-211ENST00000565662 RXFP1Q9HBX9 757 aa18.36■□□□□ 0.53
USB1-211ENST00000565662 CHST7Q9NS84 486 aa18.36■□□□□ 0.53
USB1-211ENST00000565662 SNTG2Q9NY99 539 aa18.36■□□□□ 0.53
USB1-211ENST00000565662 CITO14578 2027 aa18.35■□□□□ 0.53
USB1-211ENST00000565662 TBCAO75347 108 aaKnown RBP18.35■□□□□ 0.53
USB1-211ENST00000565662 GLUD1P00367 558 aa18.35■□□□□ 0.53
USB1-211ENST00000565662 SYT1P21579 422 aa18.35■□□□□ 0.53
USB1-211ENST00000565662 CLCN4P51793 760 aa18.35■□□□□ 0.53
USB1-211ENST00000565662 MAPK7Q13164 816 aa18.35■□□□□ 0.53
USB1-211ENST00000565662 RTL10Q7L3V2 364 aa18.35■□□□□ 0.53
USB1-211ENST00000565662 CDR2LQ86X02 465 aaPredicted RBP18.35■□□□□ 0.53
USB1-211ENST00000565662 DAW1Q8N136 415 aa18.35■□□□□ 0.53
USB1-211ENST00000565662 LARP4BQ92615 738 aaKnown RBP18.35■□□□□ 0.53
USB1-211ENST00000565662 DDX27Q96GQ7 796 aaKnown RBP18.35■□□□□ 0.53
USB1-211ENST00000565662 FBXL18Q96ME1 805 aa18.35■□□□□ 0.53
USB1-211ENST00000565662 KLHL5Q96PQ7 755 aa18.35■□□□□ 0.53
USB1-211ENST00000565662 PNMA5Q96PV4 448 aa18.35■□□□□ 0.53
USB1-211ENST00000565662 TCHPQ9BT92 498 aa18.35■□□□□ 0.53
USB1-211ENST00000565662 PARVGQ9HBI0 331 aa18.35■□□□□ 0.53
USB1-211ENST00000565662 B4GALT3O60512 393 aa18.34■□□□□ 0.53
USB1-211ENST00000565662 LILRB3O75022 631 aa18.34■□□□□ 0.53
USB1-211ENST00000565662 FAM13AO94988 1023 aa18.34■□□□□ 0.53
USB1-211ENST00000565662 EFEMP2O95967 443 aa18.34■□□□□ 0.53
USB1-211ENST00000565662 KRT18P05783 430 aaKnown RBP18.34■□□□□ 0.53
USB1-211ENST00000565662 HSP90AA1P07900 732 aaKnown RBP18.34■□□□□ 0.53
USB1-211ENST00000565662 CNPP09543 421 aaKnown RBP18.34■□□□□ 0.53
USB1-211ENST00000565662 AFF1P51825 1210 aaKnown RBP18.34■□□□□ 0.53
USB1-211ENST00000565662 NOLC1Q14978 699 aaKnown RBP eCLIP18.34■□□□□ 0.53
USB1-211ENST00000565662 NT5DC1Q5TFE4 455 aa18.34■□□□□ 0.53
USB1-211ENST00000565662 SLC22A17Q8WUG5 538 aa18.34■□□□□ 0.53
USB1-211ENST00000565662 STAMQ92783 540 aa18.34■□□□□ 0.53
USB1-211ENST00000565662 KIFC3Q9BVG8 833 aa18.34■□□□□ 0.53
USB1-211ENST00000565662 KCNH6Q9H252 994 aa18.34■□□□□ 0.53
USB1-211ENST00000565662 CD320Q9NPF0 282 aa18.34■□□□□ 0.53
USB1-211ENST00000565662 SRPRBQ9Y5M8 271 aaKnown RBP18.34■□□□□ 0.53
USB1-211ENST00000565662 CLDN3O15551 220 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 XPOTO43592 962 aaKnown RBP18.33■□□□□ 0.52
USB1-211ENST00000565662 STX6O43752 255 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 PROZP22891 400 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 NCKAP1LP55160 1127 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 KIAA0319Q5VV43 1072 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.33■□□□□ 0.52
USB1-211ENST00000565662 CCDC149Q6ZUS6 474 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 KCNK18Q7Z418 384 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 GPBP1Q86WP2 473 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 RNF135Q8IUD6 432 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 KRI1Q8N9T8 703 aaKnown RBP18.33■□□□□ 0.52
USB1-211ENST00000565662 TMEM161BQ8NDZ6 487 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 RAD54LQ92698 747 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 ACSF2Q96CM8 615 aaPredicted RBP18.33■□□□□ 0.52
USB1-211ENST00000565662 ACAP3Q96P50 834 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 TTPALQ9BTX7 342 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 VN1R3Q9BXE9 311 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 CDT1Q9H211 546 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 PLEKHA5Q9HAU0 1116 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 PTPRHQ9HD43 1115 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 MIOSQ9NXC5 875 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 ZDHHC7Q9NXF8 308 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 KLK14Q9P0G3 267 aa18.33■□□□□ 0.52
USB1-211ENST00000565662 SEL1LQ9UBV2 794 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms