RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 HSP90AA2PQ14568 343 aaPredicted RBP18.99■□□□□ 0.63
VPS9D1-203ENST00000563798 LILRA6Q6PI73 481 aa18.99■□□□□ 0.63
VPS9D1-203ENST00000563798 CCDC149Q6ZUS6 474 aa18.99■□□□□ 0.63
VPS9D1-203ENST00000563798 OTOP3Q7RTS5 596 aa18.99■□□□□ 0.63
VPS9D1-203ENST00000563798 ZBTB33Q86T24 672 aa18.99■□□□□ 0.63
VPS9D1-203ENST00000563798 IFT74Q96LB3 600 aa18.99■□□□□ 0.63
VPS9D1-203ENST00000563798 ADPGKQ9BRR6 497 aa18.99■□□□□ 0.63
VPS9D1-203ENST00000563798 PLEKHA4Q9H4M7 779 aa18.99■□□□□ 0.63
VPS9D1-203ENST00000563798 MAN1C1Q9NR34 630 aa18.99■□□□□ 0.63
VPS9D1-203ENST00000563798 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.99■□□□□ 0.63
VPS9D1-203ENST00000563798 DDX19AQ9NUU7 478 aaKnown RBP18.99■□□□□ 0.63
VPS9D1-203ENST00000563798 SNTG2Q9NY99 539 aa18.99■□□□□ 0.63
VPS9D1-203ENST00000563798 WDFY4Q6ZS81 3184 aa18.99■□□□□ 0.63
VPS9D1-203ENST00000563798 NUBP1P53384 320 aa18.98■□□□□ 0.63
VPS9D1-203ENST00000563798 IL17AQ16552 155 aa18.98■□□□□ 0.63
VPS9D1-203ENST00000563798 DCAF4L1Q3SXM0 396 aa18.98■□□□□ 0.63
VPS9D1-203ENST00000563798 KCTD17Q8N5Z5 321 aa18.98■□□□□ 0.63
VPS9D1-203ENST00000563798 SNX29Q8TEQ0 813 aa18.98■□□□□ 0.63
VPS9D1-203ENST00000563798 ACSF2Q96CM8 615 aaPredicted RBP18.98■□□□□ 0.63
VPS9D1-203ENST00000563798 LIMD1Q9UGP4 676 aa18.98■□□□□ 0.63
VPS9D1-203ENST00000563798 DNM3Q9UQ16 869 aa18.98■□□□□ 0.63
VPS9D1-203ENST00000563798 SF3B1O75533 1304 aaKnown RBP eCLIP18.98■□□□□ 0.636e-8■■■■■ 80.2
VPS9D1-203ENST00000563798 ST18O60284 1047 aa18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 TADA2AO75478 443 aa18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 RECQL4O94761 1208 aa18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 THP07101 528 aa18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 RILPL1Q5EBL4 403 aa18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 IER5LQ5T953 404 aa18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 NT5DC1Q5TFE4 455 aa18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 KRT79Q5XKE5 535 aa18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 EEF1DP3Q658K8 133 aa18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 PRSS33Q8NF86 280 aa18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 PAAF1Q9BRP4 392 aa18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 MMTAG2Q9BU76 263 aaKnown RBP18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 WDR6Q9NNW5 1121 aaKnown RBP18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 TNFSF13BQ9Y275 285 aa18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 KMT2EQ8IZD2 1858 aa18.97■□□□□ 0.63
VPS9D1-203ENST00000563798 ZDBF2Q9HCK1 2354 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 CCDC195A0A1B0GUA6 201 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 SPDYE4A6NLX3 237 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 AVPR2P30518 371 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 PTPN5P54829 565 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 HYIQ5T013 277 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 ATF7IP2Q5U623 682 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 DTHD1Q6ZMT9 781 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 DAW1Q8N136 415 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 RIN2Q8WYP3 895 aaPredicted RBP18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 ZNF707Q96C28 371 aaPredicted RBP18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 B3GALT6Q96L58 329 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 KIFC3Q9BVG8 833 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 TMEM134Q9H6X4 195 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 C17orf75Q9HAS0 396 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 ZDHHC7Q9NXF8 308 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 USP20Q9Y2K6 914 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 PLXNA3P51805 1871 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 PHLPP2Q6ZVD8 1323 aa18.96■□□□□ 0.63
VPS9D1-203ENST00000563798 E9PMD0 336 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 TMEM189-UBE2V1I3L0A0 370 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 K7ERI5 159 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 TGM5O43548 720 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 ASGR2P07307 311 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 NPTX2P47972 431 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 VCPP55072 806 aaKnown RBP18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 ATP2C1P98194 919 aaPredicted RBP18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 ELAVL2Q12926 359 aaKnown RBP18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 MAPK7Q13164 816 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 TMEM132AQ24JP5 1023 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 RTP2Q5QGT7 225 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 C1orf186Q6ZWK4 172 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 APBB1IPQ7Z5R6 666 aaPredicted RBP18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 PIK3R5Q8WYR1 880 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 TMX3Q96JJ7 454 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 NTPCRQ9BSD7 190 aaKnown RBP18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 TIPINQ9BVW5 301 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 CXCL16Q9H2A7 254 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 POLD4Q9HCU8 107 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 PTPRHQ9HD43 1115 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 ARHGAP28Q9P2N2 729 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 MYO10Q9HD67 2058 aa18.95■□□□□ 0.62
VPS9D1-203ENST00000563798 C2orf16Q68DN1 1984 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 CASTOR2A6NHX0 329 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 PP2D1A8MPX8 630 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 KIF4AO95239 1232 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 TCF15Q12870 199 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 XKR4Q5GH76 650 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 RINT1Q6NUQ1 792 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 LNX1Q8TBB1 728 aaPredicted RBP18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 RABGGTAQ92696 567 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 STAMQ92783 540 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 DRC1Q96MC2 740 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 PPP1R10Q96QC0 940 aaKnown RBP18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 TTPALQ9BTX7 342 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 NT5C3AQ9H0P0 336 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 IGSF9Q9P2J2 1179 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 CACNG4Q9UBN1 327 aa18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 RBM19Q9Y4C8 960 aaKnown RBP18.94■□□□□ 0.62
VPS9D1-203ENST00000563798 N4BP1O75113 896 aaKnown RBP18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 HIP1RO75146 1068 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 RFPL2O75678 378 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 PDGFBP01127 241 aaPredicted RBP18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms