RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 FAM84AQ96KN4 292 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 KBTBD4Q9NVX7 518 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 RAB20Q9NX57 234 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 NUP98P52948 1817 aa9.9□□□□□ -0.83
VPS39-205ENST00000562258 NRCAMQ92823 1304 aa9.9□□□□□ -0.83
VPS39-205ENST00000562258 CHD4Q14839 1912 aa9.9□□□□□ -0.83
VPS39-205ENST00000562258 COL18A1P39060 1754 aa9.9□□□□□ -0.83
VPS39-205ENST00000562258 LRRD1A4D1F6 860 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 PPP2R5CQ13362 524 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 UAP1Q16222 522 aaPredicted RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 REM2Q8IYK8 340 aaPredicted RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 ENGASEQ8NFI3 743 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 SLC30A5Q8TAD4 765 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 LPPQ93052 612 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 CCDC51Q96ER9 411 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 ZWILCHQ9H900 591 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 HYOU1Q9Y4L1 999 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 NT5C1B-RDH14C9J2C7 533 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 DUSP11O75319 330 aaKnown RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 FTCDO95954 541 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 FMO5P49326 533 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 CTCFP49711 727 aaPredicted RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 NOP14P78316 857 aaKnown RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 NME3Q13232 169 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 GJB7Q6PEY0 223 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 LRRC8AQ8IWT6 810 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 MTMR9Q96QG7 549 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 SGIP1Q9BQI5 828 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 BLOC1S4Q9NUP1 217 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 TXNDC16Q9P2K2 825 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 CPSF3Q9UKF6 684 aaKnown RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 TLL2Q9Y6L7 1015 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 ROBO3Q96MS0 1386 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 ATP2A1O14983 1001 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 PLA2G6O60733 806 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 ALDH2P05091 517 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 LONRF2Q1L5Z9 754 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 MPZL3Q6UWV2 235 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 ANO5Q75V66 913 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 NIPA1Q7RTP0 329 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 C7orf61Q8IZ16 206 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 RPUSD2Q8IZ73 545 aaKnown RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 SCFD1Q8WVM8 642 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 TNIP3Q96KP6 325 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 CERS4Q9HA82 394 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 C17orf75Q9HAS0 396 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 ENTPD7Q9NQZ7 604 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 ZNF112Q9UJU3 913 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 PPP2R2CQ9Y2T4 447 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 BZW2Q9Y6E2 419 aaKnown RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 FAM169AQ9Y6X4 670 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 TRIOBPQ9H2D6 2365 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 RGPD1P0DJD0 1748 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 UBE4BO95155 1302 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 PABPN1LA6NDY0 278 aaKnown RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 H7C0C1 242 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 SLC10A3P09131 477 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 ATXN8OSP0DMR3 200 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 ATP5OP48047 213 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 KIF11P52732 1056 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 PSMC1P62191 440 aaKnown RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 BIRC2Q13490 618 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 IKBKEQ14164 716 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 PAWRQ96IZ0 340 aaKnown RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 PGLYRP2Q96PD5 576 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 TRPV6Q9H1D0 765 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 IGFLR1Q9H665 355 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 NHEJ1Q9H9Q4 299 aaPredicted RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 KCNMB3Q9NPA1 279 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 SLC38A7Q9NVC3 462 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 CNOT8Q9UFF9 292 aaKnown RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 CHORDC1Q9UHD1 332 aaPredicted RBP9.89□□□□□ -0.83
VPS39-205ENST00000562258 SLC12A6Q9UHW9 1150 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 ZNF148Q9UQR1 794 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 FAN1Q9Y2M0 1017 aa9.89□□□□□ -0.83
VPS39-205ENST00000562258 ATP8B3O60423 1300 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 C2CD6Q53TS8 623 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 SGO2Q562F6 1265 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 SH3D19Q5HYK7 790 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 CEP120Q8N960 986 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 UBA3Q8TBC4 463 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 HTATIP2Q9BUP3 242 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 CARD6Q9BX69 1037 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 PLCB1Q9NQ66 1216 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 TRMT13Q9NUP7 481 aaKnown RBP9.88□□□□□ -0.83
VPS39-205ENST00000562258 DPP3Q9NY33 737 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 CGNQ9P2M7 1197 aaKnown RBP9.88□□□□□ -0.83
VPS39-205ENST00000562258 TAF1P21675 1872 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 EXTL3O43909 919 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 CD4P01730 458 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 CD44P16070 742 aaKnown RBP9.88□□□□□ -0.83
VPS39-205ENST00000562258 C1orf228Q6PIY5 440 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 CAPN12Q6ZSI9 719 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 VSTM4Q8IW00 320 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 CCDC89Q8N998 374 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 ASAP3Q8TDY4 903 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 GANCQ8TET4 914 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 IQCDQ96DY2 449 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 SCLYQ96I15 445 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 GDAP1L1Q96MZ0 367 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms