RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	MTDH	Q86UE4	582 aa	Known RBP	3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	METTL16	Q86W50	562 aa	Known RBP	3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	FTSJ3	Q8IY81	847 aa	Known RBP	3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	BOLL	Q8N9W6	283 aa	Known RBP	3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	SSH1	Q8WYL5	1049 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	TSR2	Q969E8	191 aa	Known RBP	3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	SNX21	Q969T3	373 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	COQ10A	Q96MF6	247 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	C22orf23	Q9BZE7	217 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	SLK	Q9H2G2	1235 aa	Predicted RBP	3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	SMC4	Q9NTJ3	1288 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	ZBTB40	Q9NUA8	1239 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	SLC52A1	Q9NWF4	448 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	TERF2IP	Q9NYB0	399 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	CHMP5	Q9NZZ3	219 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	RNF7	Q9UBF6	113 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	EIF2B4	Q9UI10	523 aa	Known RBP	3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	INPP5F	Q9Y2H2	1132 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	FRMD4B	Q9Y2L6	1034 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	ASB1	Q9Y576	335 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	MRVI1	Q9Y6F6	885 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	LTN1	O94822	1766 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	LMO7	Q8WWI1	1683 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	PXDNL	A1KZ92	1463 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	RTL1	A6NKG5	1358 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	SIPA1L3	O60292	1781 aa	Predicted RBP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	COL11A2	P13942	1736 aa	Predicted RBP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	BLACE	A4D250	179 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	FYB1	O15117	783 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	GJB6	O95452	261 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	JUN	P05412	331 aa	Known RBP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	SSB	P05455	408 aa	Known RBP eCLIP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	U2AF1L5	P0DN76	240 aa	Predicted RBP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	VSIG10L2	P0DP72	767 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	PYGM	P11217	842 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	NAT1	P18440	290 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	NPEPPS	P55786	919 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	U2AF1	Q01081	240 aa	Known RBP eCLIP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	NUCB1	Q02818	461 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	EXOSC9	Q06265	439 aa	Known RBP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	IDI1	Q13907	227 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	IQSEC1	Q6DN90	963 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	CCDC62	Q6P9F0	684 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	CLEC17A	Q6ZS10	378 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	ITPRIP	Q8IWB1	547 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	CMTR2	Q8IYT2	770 aa	Known RBP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	BCL6B	Q8N143	479 aa	Predicted RBP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	TMEM57	Q8N5G2	664 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	C9orf106	Q8NAJ2	232 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	ASB15	Q8WXK1	588 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	ARHGAP45	Q92619	1136 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	SLC46A2	Q9BY10	475 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	WDR11	Q9BZH6	1224 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	GZF1	Q9H116	711 aa	Predicted RBP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	PNN	Q9H307	717 aa	Known RBP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	PRDM13	Q9H4Q3	707 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	PRKAG3	Q9UGI9	489 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	EPN1	Q9Y6I3	576 aa	Predicted RBP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	NWD1	Q149M9	1564 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	MYH15	Q9Y2K3	1946 aa		3.03	□□□□□ -1.92
SPG11-223	ENST00000560858	ARHGEF10	O15013	1369 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	KIAA0232	Q92628	1395 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	ADAMTS7	Q9UKP4	1686 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	TCHH	Q07283	1943 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	ZNF185	O15231	689 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	IPO8	O15397	1037 aa	Known RBP	3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	FOXP2	O15409	715 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	DAPK3	O43293	454 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	DIAPH1	O60610	1272 aa	Known RBP	3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	TOX4	O94842	621 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	ZNF853	P0CG23	659 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	SRGAP2C	P0DJJ0	459 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	HKR1	P10072	659 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	HOXB6	P17509	224 aa	Known RBP	3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	HK1	P19367	917 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	PTMS	P20962	102 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	TNNT2	P45379	298 aa	Predicted RBP	3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	ABCG1	P45844	678 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	PTH2R	P49190	550 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	MFAP1	P55081	439 aa	Known RBP	3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	CALD1	Q05682	793 aa	Known RBP	3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	NFE2L2	Q16236	605 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	FAM47C	Q5HY64	1035 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	GGT6	Q6P531	493 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	CHD1L	Q86WJ1	897 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	VPS37D	Q86XT2	251 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	NT5DC4	Q86YG4	428 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	ARHGEF19	Q8IW93	802 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	HSCB	Q8IWL3	235 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	ZNF366	Q8N895	744 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	PLA2G15	Q8NCC3	412 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	SIMC1	Q8NDZ2	872 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	PCDH19	Q8TAB3	1148 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	SLC7A14	Q8TBB6	771 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	CAGE1	Q8TC20	777 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	OSBP2	Q969R2	916 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	GCC1	Q96CN9	775 aa		3.02	□□□□□ -1.93
SPG11-223	ENST00000560858	LRFN3	Q9BTN0	628 aa		3.02	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 21 ms