RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 A0A087X0T9 212 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 TRAFD1O14545 582 aaPredicted RBP11.66□□□□□ -0.54
USP3-206ENST00000558157 RASGRF2O14827 1237 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 ADAMTS3O15072 1205 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 FAM228BP0C875 321 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 PTPRAP18433 802 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 KLHL30Q0D2K2 578 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 SETDB1Q15047 1291 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 SH2D4BQ5SQS7 431 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 NOL9Q5SY16 702 aaKnown RBP11.66□□□□□ -0.54
USP3-206ENST00000558157 SYDE2Q5VT97 1194 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 RNF220Q5VTB9 566 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 PEX26Q7Z412 305 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 RNF25Q96BH1 459 aaPredicted RBP11.66□□□□□ -0.54
USP3-206ENST00000558157 LRRC4CQ9HCJ2 640 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 RIC8AQ9NPQ8 531 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 MTRF1LQ9UGC7 380 aaKnown RBP11.66□□□□□ -0.54
USP3-206ENST00000558157 CIDEBQ9UHD4 219 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 ZMYND8Q9ULU4 1186 aaPredicted RBP11.66□□□□□ -0.54
USP3-206ENST00000558157 CLEC11AQ9Y240 323 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 STXBP5LQ9Y2K9 1186 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 DAAM1Q9Y4D1 1078 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 PVALEFA0A1B0GWK0 134 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 TLDC2A0PJX2 215 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 MAP3K13O43283 966 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 PPP1R11O60927 126 aaPredicted RBP11.65□□□□□ -0.54
USP3-206ENST00000558157 AFPP02771 609 aaKnown RBP11.65□□□□□ -0.54
USP3-206ENST00000558157 NAPAP54920 295 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 KCNMA1Q12791 1236 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 MTMR2Q13614 643 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 SLC29A2Q14542 456 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 MYBPC3Q14896 1274 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 TPCN2Q8NHX9 752 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 GBP5Q96PP8 586 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 NDNQ99608 321 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 TSG101Q99816 390 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 UBE2OQ9C0C9 1292 aaKnown RBP11.65□□□□□ -0.54
USP3-206ENST00000558157 DPH5Q9H2P9 285 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 RRAGCQ9HB90 399 aa11.65□□□□□ -0.54
USP3-206ENST00000558157 PNMA6FA0A0J9YX94 578 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 A0A1B0GVG6 124 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 ZBTB5O15062 677 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 NOL4O94818 638 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 FAM163BP0C2L3 166 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 SNAP25P60880 206 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 DR1Q01658 176 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 MTFR1Q15390 333 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 ASIC2Q16515 512 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 INTS8Q75QN2 995 aaKnown RBP11.65□□□□□ -0.55
USP3-206ENST00000558157 KIAA0895Q8NCT3 520 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 STKLD1Q8NE28 680 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 FAM13CQ8NE31 585 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 COA7Q96BR5 231 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 PPP1R14BQ96C90 147 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 EEF2KMTQ96G04 330 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 NR1H4Q96RI1 486 aaPredicted RBP11.65□□□□□ -0.55
USP3-206ENST00000558157 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.65□□□□□ -0.55
USP3-206ENST00000558157 MIS12Q9H081 205 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 KIAA1683Q9H0B3 1180 aa11.65□□□□□ -0.55
USP3-206ENST00000558157 DNAAF2Q9NVR5 837 aaKnown RBP11.65□□□□□ -0.55
USP3-206ENST00000558157 SIGLEC16A6NMB1 481 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 GNA14O95837 355 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 GSTT1P30711 240 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 YARSP54577 528 aaKnown RBP11.64□□□□□ -0.55
USP3-206ENST00000558157 AUHQ13825 339 aaKnown RBP11.64□□□□□ -0.55
USP3-206ENST00000558157 VGLL4Q14135 290 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 DBN1Q16643 649 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 QRICH1Q2TAL8 776 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 LRRC55Q6ZSA7 311 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 DAAM2Q86T65 1068 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 HES6Q96HZ4 224 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 SERPINB12Q96P63 405 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 WDR18Q9BV38 432 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 AS3MTQ9HBK9 375 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 ADAMTS1Q9UHI8 967 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 SNCAIPQ9Y6H5 919 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 COMMD3-BMI1R4GMX3 469 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 hCG_1984214I3L0E3 225 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 PODXLO00592 558 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 UPP2O95045 317 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 TJP3O95049 919 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 ITGA4P13612 1032 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 RARGP13631 454 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 HSPA6P17066 643 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 TPP2P29144 1249 aaPredicted RBP11.64□□□□□ -0.55
USP3-206ENST00000558157 STAT2P52630 851 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 SPP2Q13103 211 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 MAP1SQ66K74 1059 aaPredicted RBP11.64□□□□□ -0.55
USP3-206ENST00000558157 MOB2Q70IA6 237 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 MAEAQ7L5Y9 396 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 EXOC3L1Q86VI1 746 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 ZNF713Q8N859 430 aaPredicted RBP11.64□□□□□ -0.55
USP3-206ENST00000558157 GATA6Q92908 595 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 MAGEB18Q96M61 343 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 HAPLN3Q96S86 360 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 MMADHCQ9H3L0 296 aaPredicted RBP11.64□□□□□ -0.55
USP3-206ENST00000558157 TLE6Q9H808 572 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 GGT7Q9UJ14 662 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 PRR12Q9ULL5 1215 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 PCDHA4Q9UN74 947 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms