RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 NDUFB10O96000 172 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 MMP10P09238 476 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 SLC8A1P32418 973 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 STX2P32856 288 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 BFSP1Q12934 665 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 SIAH1Q8IUQ4 282 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 ZC3H3Q8IXZ2 948 aaKnown RBP13.22□□□□□ -0.29
LDLR-205ENST00000557933 PGM2Q96G03 612 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 CEP350Q5VT06 3117 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 POC1B-GALNT4F8VUJ3 575 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 KRT5P13647 590 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 ITGA8P53708 1063 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 ORC2Q13416 577 aaPredicted RBP13.21□□□□□ -0.29
LDLR-205ENST00000557933 EAPPQ56P03 285 aaPredicted RBP13.21□□□□□ -0.29
LDLR-205ENST00000557933 C6orf118Q5T5N4 469 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 KAZNQ674X7 775 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 CGB2Q6NT52 195 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 RFX8Q6ZV50 586 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 MASTLQ96GX5 879 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 AMNQ9BXJ7 453 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 C10orf88Q9H8K7 445 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 HAO1Q9UJM8 370 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 GGA2Q9UJY4 613 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 C15orf41Q9Y2V0 281 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 PSME4Q14997 1843 aa13.21□□□□□ -0.29
LDLR-205ENST00000557933 A0A1B0GUA9 196 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 PI4K2BG5E9Z4 385 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 GOLGA8SH3BPF8 625 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 GOLGA8MH3BSY2 632 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 TP73O15350 636 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 C21orf2O43822 256 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 GH2P01242 217 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 ATP2B4P23634 1241 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 ADCY8P40145 1251 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 BZW1Q7L1Q6 419 aaKnown RBP13.21□□□□□ -0.3
LDLR-205ENST00000557933 ZNF720Q7Z2F6 126 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 SLC13A5Q86YT5 568 aaPredicted RBP13.21□□□□□ -0.3
LDLR-205ENST00000557933 ANKLE1Q8NAG6 615 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 CPA5Q8WXQ8 436 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 TRIM6Q9C030 488 aaPredicted RBP13.21□□□□□ -0.3
LDLR-205ENST00000557933 ATP6V0A4Q9HBG4 840 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 PCDHA3Q9Y5H8 950 aa13.21□□□□□ -0.3
LDLR-205ENST00000557933 A0A0A6YYK5 440 aaPredicted RBP13.2□□□□□ -0.3
LDLR-205ENST00000557933 GAS7O60861 476 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 CBX6O95503 412 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 ECEL1O95672 775 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 EYA4O95677 639 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 ZSCAN5DPP0CG00 497 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 BMP3P12645 472 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 SMARCA1P28370 1054 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 PDE6CP51160 858 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 SP4Q02446 784 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 ADCY2Q08462 1091 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 RRP1BQ14684 758 aaKnown RBP13.2□□□□□ -0.3
LDLR-205ENST00000557933 C1orf186Q6ZWK4 172 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 SPATA21Q7Z572 469 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 CBWD2Q8IUF1 395 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 GLIS1Q8NBF1 620 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.2□□□□□ -0.3
LDLR-205ENST00000557933 ZNF622Q969S3 477 aaKnown RBP eCLIP13.2□□□□□ -0.33e-9■□□□□ 10.9
LDLR-205ENST00000557933 ERP27Q96DN0 273 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 FIZ1Q96SL8 496 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 KLF6Q99612 283 aaPredicted RBP13.2□□□□□ -0.3
LDLR-205ENST00000557933 SYT11Q9BT88 431 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 HOMER2Q9NSB8 354 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 NCANO14594 1321 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 A0A1W2PRG0 241 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 hCG_1984214I3L0E3 225 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 AGTP01019 485 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 HLA-DOAP06340 250 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 CHRNA3P32297 505 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 FOXN2P32314 431 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 PEX5P50542 639 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 GPC5P78333 572 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 ZNF713Q8N859 430 aaPredicted RBP13.2□□□□□ -0.3
LDLR-205ENST00000557933 SEMA4DQ92854 862 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 LXNQ9BS40 222 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 FBXO28Q9NVF7 368 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 ANAPC7Q9UJX3 599 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 SUGT1Q9Y2Z0 365 aa13.2□□□□□ -0.3
LDLR-205ENST00000557933 ASAP2O43150 1006 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 ETS1P14921 441 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 DHX34Q14147 1143 aaKnown RBP13.19□□□□□ -0.3
LDLR-205ENST00000557933 FASTKD3Q14CZ7 662 aaKnown RBP13.19□□□□□ -0.3
LDLR-205ENST00000557933 NBPF20Q3BBV1 942 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 ARHGAP27Q6ZUM4 889 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 SUPT20HQ8NEM7 779 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 NAP1L3Q99457 506 aaPredicted RBP13.19□□□□□ -0.3
LDLR-205ENST00000557933 GAKO14976 1311 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 SYNGAP1Q96PV0 1343 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 GOLGA8RI6L899 631 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 SLC16A4O15374 487 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 MAP3K13O43283 966 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 IL1R1P14778 569 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 CD58P19256 250 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 MSH2P43246 934 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 COPS2P61201 443 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 ATP13A4Q4VNC1 1196 aa13.19□□□□□ -0.3
LDLR-205ENST00000557933 APOBEC3HQ6NTF7 200 aaKnown RBP13.19□□□□□ -0.3
LDLR-205ENST00000557933 MIGA2Q7L4E1 593 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms