RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 CLTAP09496 248 aa17.44■□□□□ 0.38
SHMT2-232ENST00000557487 CRKP46108 304 aa17.44■□□□□ 0.38
SHMT2-232ENST00000557487 MFAP3P55082 362 aa17.44■□□□□ 0.38
SHMT2-232ENST00000557487 FKBP1AP62942 108 aaKnown RBP17.44■□□□□ 0.38
SHMT2-232ENST00000557487 CCDC15Q0P6D6 951 aa17.44■□□□□ 0.38
SHMT2-232ENST00000557487 NFIAQ12857 509 aa17.44■□□□□ 0.38
SHMT2-232ENST00000557487 RRP1BQ14684 758 aaKnown RBP17.44■□□□□ 0.38
SHMT2-232ENST00000557487 E2F5Q15329 346 aa17.44■□□□□ 0.38
SHMT2-232ENST00000557487 AADACL2Q6P093 401 aa17.44■□□□□ 0.38
SHMT2-232ENST00000557487 SLC17A8Q8NDX2 589 aa17.44■□□□□ 0.38
SHMT2-232ENST00000557487 ZNF622Q969S3 477 aaKnown RBP eCLIP17.44■□□□□ 0.38
SHMT2-232ENST00000557487 SNF8Q96H20 258 aa17.44■□□□□ 0.38
SHMT2-232ENST00000557487 CCDC113Q9H0I3 377 aa17.44■□□□□ 0.38
SHMT2-232ENST00000557487 RXFP1Q9HBX9 757 aa17.44■□□□□ 0.38
SHMT2-232ENST00000557487 NOP53Q9NZM5 478 aaKnown RBP17.44■□□□□ 0.38
SHMT2-232ENST00000557487 TMEM120BA0PK00 339 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 UBOX5O94941 541 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 TTC4O95801 387 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 HOXA13P31271 388 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-232ENST00000557487 SLCO1A2P46721 670 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 IFNAR2P48551 515 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 CLNS1AP54105 237 aaKnown RBP17.43■□□□□ 0.38
SHMT2-232ENST00000557487 MAP2K1Q02750 393 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-232ENST00000557487 PTK6Q13882 451 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 ABCB5Q2M3G0 1257 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 FAM133BQ5BKY9 247 aaKnown RBP17.43■□□□□ 0.38
SHMT2-232ENST00000557487 ARHGEF18Q6ZSZ5 1173 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 SPATA21Q7Z572 469 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 TBC1D1Q86TI0 1168 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-232ENST00000557487 PNMA8AQ86V59 439 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-232ENST00000557487 ARHGEF19Q8IW93 802 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 FAM81BQ96LP2 452 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 NUP85Q9BW27 656 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 TEKT3Q9BXF9 490 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 FOXP3Q9BZS1 431 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 TRIM7Q9C029 511 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 ST6GALNAC4Q9H4F1 302 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 ECT2Q9H8V3 914 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 ABCF3Q9NUQ8 709 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 LGALS13Q9UHV8 139 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 DBR1Q9UK59 544 aaKnown RBP17.43■□□□□ 0.38
SHMT2-232ENST00000557487 SIPA1L1O43166 1804 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 HIP1RO75146 1068 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 GAS8O95995 478 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 POLR2MP0CAP2 368 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 CHRNB2P17787 502 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 SCNN1DP51172 638 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 ACVR2BQ13705 512 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 RASA3Q14644 834 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 CEP55Q53EZ4 464 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 RNF43Q68DV7 783 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 B3GNT9Q6UX72 402 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 PPP1R21Q6ZMI0 780 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 RELL1Q8IUW5 271 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 RIBC1Q8N443 379 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-232ENST00000557487 XXYLT1Q8NBI6 393 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 C7orf43Q8WVR3 580 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 KIFAP3Q92845 792 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 RIT2Q99578 217 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 TIPINQ9BVW5 301 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 IKZF4Q9H2S9 585 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 C15orf41Q9Y2V0 281 aa17.43■□□□□ 0.38
SHMT2-232ENST00000557487 TCP11X1B4DZS4 312 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 K7ENM7 598 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 RIMBP2O15034 1052 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 WFS1O76024 890 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 ALDH1B1P30837 517 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 MXI1P50539 228 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 SGO2Q562F6 1265 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 VSTM1Q6UX27 236 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 KSR1Q8IVT5 923 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 PSPC1Q8WXF1 523 aaKnown RBP17.42■□□□□ 0.38
SHMT2-232ENST00000557487 SHC3Q92529 594 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 L3MBTL3Q96JM7 780 aaPredicted RBP17.42■□□□□ 0.38
SHMT2-232ENST00000557487 MAGEB18Q96M61 343 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 PCDHB18PQ96TA0 734 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 CCDC77Q9BR77 488 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 ARHGEF3Q9NR81 526 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 PRKAG3Q9UGI9 489 aa17.42■□□□□ 0.38
SHMT2-232ENST00000557487 SORBS3O60504 671 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 SLC1A1P43005 524 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 KRT17Q04695 432 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 PPP3CAQ08209 521 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.41■□□□□ 0.38
SHMT2-232ENST00000557487 NOP9Q86U38 636 aaKnown RBP17.41■□□□□ 0.38
SHMT2-232ENST00000557487 CCDC25Q86WR0 208 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 ZNF653Q96CK0 615 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 KLHL29Q96CT2 875 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 TRAIPQ9BWF2 469 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 PRR12Q9ULL5 1215 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 AGAP1Q9UPQ3 857 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 PTPN22Q9Y2R2 807 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 ADGRA3Q8IWK6 1321 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 RBBP6Q7Z6E9 1792 aaKnown RBP17.41■□□□□ 0.38
SHMT2-232ENST00000557487 ANKRD63C9JTQ0 380 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 CHMP2AO43633 222 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 ATP5HO75947 161 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 VIL1P09327 827 aaKnown RBP17.41■□□□□ 0.38
SHMT2-232ENST00000557487 CDR2Q01850 454 aa17.41■□□□□ 0.38
SHMT2-232ENST00000557487 CENPCQ03188 943 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms