RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TOM1L1O75674 476 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 TOMM70O94826 608 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 FAM228BP0C875 321 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 TCP1P17987 556 aaKnown RBP13.65□□□□□ -0.22
SHMT2-229ENST00000557348 DLG4P78352 724 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 AMPD2Q01433 879 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 CAPSQ13938 189 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 MAPK6Q16659 721 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 KIAA0753Q2KHM9 967 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 C1orf220Q5T0J3 134 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 IQSEC1Q6DN90 963 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 ALKBH5Q6P6C2 394 aaKnown RBP13.65□□□□□ -0.22
SHMT2-229ENST00000557348 TRAPPC11Q7Z392 1133 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 LMBR1Q8WVP7 490 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 PRPF31Q8WWY3 499 aaKnown RBP13.65□□□□□ -0.22
SHMT2-229ENST00000557348 ATRIPQ8WXE1 791 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 R3HDMLQ9H3Y0 253 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 TRIM10Q9UDY6 481 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 NAGPAQ9UK23 515 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 DOCK5Q9H7D0 1870 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 A0A0B4J269 797 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 CTAGE15A4D2H0 777 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 GOLGA8IPA6NC78 632 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 GOLGA8JA6NMD2 632 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 CTAGE8P0CG41 777 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 TMOD1P28289 359 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 POU5F1Q01860 360 aaKnown RBP13.64□□□□□ -0.23
SHMT2-229ENST00000557348 APBA1Q02410 837 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 GCNT1Q02742 428 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 LAMTOR4Q0VGL1 99 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 DUSP28Q4G0W2 176 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 ZNF571Q7Z3V5 609 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-229ENST00000557348 CCDC91Q7Z6B0 441 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 CTAGE6Q86UF2 777 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 CTAGE4Q8IX94 777 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 DHX38Q92620 1227 aaKnown RBP13.64□□□□□ -0.23
SHMT2-229ENST00000557348 MAML3Q96JK9 1138 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 FAM213AQ9BRX8 229 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 TINF2Q9BSI4 451 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 UBE2TQ9NPD8 197 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-229ENST00000557348 RAB20Q9NX57 234 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 RNF14Q9UBS8 474 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 PLXNB2O15031 1838 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 SIP14410 1827 aa13.64□□□□□ -0.23
SHMT2-229ENST00000557348 CLDN3O15551 220 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 LGALS2P05162 132 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 H2AFZP0C0S5 128 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 HOXD8P13378 290 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-229ENST00000557348 MARK3P27448 753 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 MATR3P43243 847 aaKnown RBP eCLIP13.63□□□□□ -0.23
SHMT2-229ENST00000557348 MKRN3Q13064 507 aaKnown RBP13.63□□□□□ -0.23
SHMT2-229ENST00000557348 WDR44Q5JSH3 913 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 PHLDB3Q6NSJ2 640 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 MMS22LQ6ZRQ5 1243 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 H2AFVQ71UI9 128 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 RASAL3Q86YV0 1011 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 CCDC127Q96BQ5 260 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 MSTO1Q9BUK6 570 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 CCDC113Q9H0I3 377 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 ANKZF1Q9H8Y5 726 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 VPS18Q9P253 973 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 SUCLA2Q9P2R7 463 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-229ENST00000557348 PCDHGC5Q9Y5F6 944 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 ZBTB42B2RXF5 422 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 H3BQF6 201 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 ITGBL1O95965 494 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-229ENST00000557348 ABL1P00519 1130 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 CHRM1P11229 460 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-229ENST00000557348 PHKA2P46019 1235 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 ZNF157P51786 506 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-229ENST00000557348 NAP1L1P55209 391 aaKnown RBP13.63□□□□□ -0.23
SHMT2-229ENST00000557348 CDC42EP1Q00587 391 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 MAP2K1Q02750 393 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-229ENST00000557348 KYAT1Q16773 422 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 SYCE1Q8N0S2 351 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 PLEKHO2Q8TD55 490 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 CGRRF1Q99675 332 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 PTPN18Q99952 460 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 KATNBL1Q9H079 304 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 SUGCTQ9HAC7 445 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 PDE11AQ9HCR9 933 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 PDGFCQ9NRA1 345 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 C1orf112Q9NSG2 853 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 NENFQ9UMX5 172 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 HYOU1Q9Y4L1 999 aa13.63□□□□□ -0.23
SHMT2-229ENST00000557348 ADGRA2Q96PE1 1338 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 MSCO60682 206 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 SNAI1O95863 264 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-229ENST00000557348 PRKCBP05771 671 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 DLATP10515 647 aaKnown RBP13.62□□□□□ -0.23
SHMT2-229ENST00000557348 TNFAIP3P21580 790 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 ITIH3Q06033 890 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 SREBF2Q12772 1141 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 ACVR2BQ13705 512 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 CASP8Q14790 479 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 DGKDQ16760 1214 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 CST9Q5W186 159 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 SV2AQ7L0J3 742 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 TRIM50Q86XT4 487 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 IFNLR1Q8IU57 520 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms