RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 LILRB3O75022 631 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 ZNF623O75123 536 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 RFPL2O75678 378 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 PSMD10O75832 226 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 URODP06132 367 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 CCT2P78371 535 aaKnown RBP12.64□□□□□ -0.39
VPS33B-204ENST00000554660 SPECC1Q5M775 1068 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 DRC7Q8IY82 874 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 KIAA2013Q8IYS2 634 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 ST13P5Q8NFI4 369 aaPredicted RBP12.64□□□□□ -0.39
VPS33B-204ENST00000554660 CCDC148Q8NFR7 591 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 WASF1Q92558 559 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 PGBD4Q96DM1 585 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 CCDC94Q9BW85 323 aaPredicted RBP12.64□□□□□ -0.39
VPS33B-204ENST00000554660 SLC26A6Q9BXS9 759 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 INO80BQ9C086 356 aaPredicted RBP12.64□□□□□ -0.39
VPS33B-204ENST00000554660 TBC1D17Q9HA65 648 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 IFT122Q9HBG6 1241 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 BMP2KQ9NSY1 1161 aaPredicted RBP12.64□□□□□ -0.39
VPS33B-204ENST00000554660 KIAA1468Q9P260 1216 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 IGSF9Q9P2J2 1179 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 ZNF292O60281 2723 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 CCDC195A0A1B0GUA6 201 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 F8W810 466 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 INPPL1O15357 1258 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 MAFO75444 373 aaPredicted RBP12.63□□□□□ -0.39
VPS33B-204ENST00000554660 LMNAP02545 664 aaKnown RBP12.63□□□□□ -0.39
VPS33B-204ENST00000554660 SOD2P04179 222 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 CDC42EP1Q00587 391 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 AKAP17AQ02040 695 aaKnown RBP12.63□□□□□ -0.39
VPS33B-204ENST00000554660 SLC39A14Q15043 492 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 SF3A1Q15459 793 aaKnown RBP12.63□□□□□ -0.39
VPS33B-204ENST00000554660 ZRSR1Q15695 479 aaKnown RBP12.63□□□□□ -0.39
VPS33B-204ENST00000554660 UBXN11Q5T124 520 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 B3GNT9Q6UX72 402 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 ANO5Q75V66 913 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 TAS1R1Q7RTX1 841 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 LRRC8AQ8IWT6 810 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 DHX40Q8IX18 779 aaKnown RBP12.63□□□□□ -0.39
VPS33B-204ENST00000554660 SPC24Q8NBT2 197 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 CCDC150Q8NCX0 1101 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 CMASQ8NFW8 434 aaPredicted RBP12.63□□□□□ -0.39
VPS33B-204ENST00000554660 RDM1Q8NG50 284 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 GPR152Q8TDT2 470 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 TBCKQ8TEA7 893 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 ANKRD7Q92527 254 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 FAM193BQ96PV7 902 aaPredicted RBP12.63□□□□□ -0.39
VPS33B-204ENST00000554660 RPS6KC1Q96S38 1066 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 MYADMQ96S97 322 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 TMEM175Q9BSA9 504 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 HERC2P3Q9BVR0 1158 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 MINDY3Q9H8M7 445 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 NCOA5Q9HCD5 579 aaKnown RBP12.63□□□□□ -0.39
VPS33B-204ENST00000554660 WDR6Q9NNW5 1121 aaKnown RBP12.63□□□□□ -0.39
VPS33B-204ENST00000554660 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.63□□□□□ -0.39
VPS33B-204ENST00000554660 WNT16Q9UBV4 365 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 FAN1Q9Y2M0 1017 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 COL4A3BPQ9Y5P4 624 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 COL4A3Q01955 1670 aa12.63□□□□□ -0.39
VPS33B-204ENST00000554660 NRDCO43847 1150 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 GLUD1P00367 558 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 ADH1AP07327 375 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 DCNP07585 359 aaKnown RBP12.62□□□□□ -0.39
VPS33B-204ENST00000554660 SPATA31D3P0C874 917 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 OR1G1P47890 313 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 GLUD2P49448 558 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 NPEPPSP55786 919 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 NLRP12P59046 1061 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 SPATA31D4Q6ZUB0 917 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 C11orf57Q6ZUT1 292 aaPredicted RBP12.62□□□□□ -0.39
VPS33B-204ENST00000554660 GET4Q7L5D6 327 aaPredicted RBP12.62□□□□□ -0.39
VPS33B-204ENST00000554660 PDCL2Q8N4E4 241 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 SLC44A3Q8N4M1 653 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 ZNF579Q8NAF0 562 aaKnown RBP12.62□□□□□ -0.39
VPS33B-204ENST00000554660 SMG7Q92540 1137 aaKnown RBP12.62□□□□□ -0.39
VPS33B-204ENST00000554660 ZNF707Q96C28 371 aaPredicted RBP12.62□□□□□ -0.39
VPS33B-204ENST00000554660 B3GALT6Q96L58 329 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 HINFPQ9BQA5 517 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 RNF26Q9BY78 433 aaPredicted RBP12.62□□□□□ -0.39
VPS33B-204ENST00000554660 EPS15L1Q9UBC2 864 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 STK39Q9UEW8 545 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 CNTNAP2Q9UHC6 1331 aa12.62□□□□□ -0.39
VPS33B-204ENST00000554660 CCP110O43303 1012 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 ALDH2P05091 517 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 SRFP11831 508 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 U2AF2P26368 475 aaKnown RBP eCLIP12.61□□□□□ -0.39
VPS33B-204ENST00000554660 HOXA11P31270 313 aaPredicted RBP12.61□□□□□ -0.39
VPS33B-204ENST00000554660 MLH1P40692 756 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 USP11P51784 963 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 NLRP5P59047 1200 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 NTRK3Q16288 839 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 Q4G0T1 1027 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 AXDND1Q5T1B0 1012 aaPredicted RBP12.61□□□□□ -0.39
VPS33B-204ENST00000554660 DGLUCYQ7Z3D6 616 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 MRPL10Q7Z7H8 261 aaKnown RBP12.61□□□□□ -0.39
VPS33B-204ENST00000554660 GLYCTKQ8IVS8 523 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 COLGALT2Q8IYK4 626 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 RNF168Q8IYW5 571 aaPredicted RBP12.61□□□□□ -0.39
VPS33B-204ENST00000554660 ETNPPLQ8TBG4 499 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 CACTINQ8WUQ7 758 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms