RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 MRRFQ96E11 262 aaKnown RBP5.19□□□□□ -1.58
LIMA1-214ENST00000552783 FAM84AQ96KN4 292 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 ZSWIM1Q9BR11 485 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 LZTS2Q9BRK4 669 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 NSRP1Q9H0G5 558 aaKnown RBP5.19□□□□□ -1.58
LIMA1-214ENST00000552783 BHMT2Q9H2M3 363 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 PPP1R1BQ9UD71 204 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-214ENST00000552783 R3HDM2Q9Y2K5 976 aaKnown RBP5.19□□□□□ -1.58
LIMA1-214ENST00000552783 ASB3Q9Y575 518 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 TAF1LQ8IZX4 1826 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 DOT1LQ8TEK3 1739 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 SIGLEC16A6NMB1 481 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 HIP1RO75146 1068 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 SP100P23497 879 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-214ENST00000552783 STX2P32856 288 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 CYP2J2P51589 502 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 MXRA7P84157 204 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 KRT17Q04695 432 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 MTFR1Q15390 333 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 CWF19L1Q69YN2 538 aaKnown RBP5.19□□□□□ -1.58
LIMA1-214ENST00000552783 OR52E8Q6IFG1 317 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 RHBDF2Q6PJF5 856 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 BTNL9Q6UXG8 535 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 C16orf86Q6ZW13 317 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 CCNJLQ8IV13 435 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 ASAP3Q8TDY4 903 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 CD101Q93033 1021 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 FAM136AQ96C01 138 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 TSC22D3Q99576 134 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 RTFDC1Q9BY42 306 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-214ENST00000552783 PITPNM3Q9BZ71 974 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 HOMER3Q9NSC5 361 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 PCMTD2Q9NV79 361 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 CYP39A1Q9NYL5 469 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 KIF13BQ9NQT8 1826 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 FRMPD4Q14CM0 1322 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 FAM86B1E9PN63 330 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 EML1O00423 815 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 FAM86B2P0C5J1 330 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 FERP16591 822 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 YY1P25490 414 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 GCAP28676 217 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 CHRNA3P32297 505 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 FMO5P49326 533 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 ITGA8P53708 1063 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 TBC1D25Q3MII6 688 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 CAPN12Q6ZSI9 719 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 RFX8Q6ZV50 586 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 TAOK1Q7L7X3 1001 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 APBB1IPQ7Z5R6 666 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-214ENST00000552783 ANKS1BQ7Z6G8 1248 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 VPS36Q86VN1 386 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 AMIGO3Q86WK7 504 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 SLC13A5Q86YT5 568 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-214ENST00000552783 HOMEZQ8IX15 550 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 KBTBD2Q8IY47 623 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 SYCP3Q8IZU3 236 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 CEP120Q8N960 986 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 LMO3Q8TAP4 145 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 LRMDAQ9H2I8 198 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 NMRK1Q9NWW6 199 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 NINJ2Q9NZG7 142 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 KLHL14Q9P2G3 628 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 INTUQ9ULD6 942 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 SPATA31A5Q5VU36 1347 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 SPATA31A7Q8IWB4 1347 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 MYO3BQ8WXR4 1341 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 ANKRD62A6NC57 917 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 C2orf71A6NGG8 1288 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 PDXKO00764 312 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 LIN7AO14910 233 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SGPL1O95470 568 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 TTC4O95801 387 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 GYS1P13807 737 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 ATP6V1C1P21283 382 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 TNFAIP3P21580 790 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 MTM1Q13496 603 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 MOGSQ13724 837 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 FASTKD3Q14CZ7 662 aaKnown RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 ZFYVE27Q5T4F4 411 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 RNF43Q68DV7 783 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 PRR5LQ6MZQ0 368 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 VSIG1Q86XK7 387 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 FAM186BQ8IYM0 893 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 C4orf33Q8N1A6 199 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 GLIS1Q8NBF1 620 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 C7orf43Q8WVR3 580 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 LENG9Q96B70 501 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 IFT43Q96FT9 208 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 STK33Q9BYT3 514 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 INTS2Q9H0H0 1204 aaKnown RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 NT5C3AQ9H0P0 336 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 MTMR4Q9NYA4 1195 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 KANSL3Q9P2N6 904 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 MTRF1LQ9UGC7 380 aaKnown RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 ATF5Q9Y2D1 282 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 CTDP1Q9Y5B0 961 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 AHCYL1O43865 530 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 KRT36O76013 467 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 RTN3O95197 1032 aaPredicted RBP5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms