RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 LONRF3Q496Y0 759 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 ATAT1Q5SQI0 421 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 RARS2Q5T160 578 aaKnown RBP8.5□□□□□ -1.05
NEK3-201ENST00000550331 AGMOQ6ZNB7 445 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 FERMT3Q86UX7 667 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 ZDHHC14Q8IZN3 488 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 TDRD5Q8NAT2 981 aaKnown RBP8.5□□□□□ -1.05
NEK3-201ENST00000550331 RNF149Q8NC42 400 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 SLC22A17Q8WUG5 538 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 BCL7CQ8WUZ0 217 aaPredicted RBP8.5□□□□□ -1.05
NEK3-201ENST00000550331 PRPF31Q8WWY3 499 aaKnown RBP8.5□□□□□ -1.05
NEK3-201ENST00000550331 AUTS2Q8WXX7 1259 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 WASF1Q92558 559 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 HAS1Q92839 578 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 TMEM143Q96AN5 459 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 EMILIN2Q9BXX0 1053 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 MFSD1Q9H3U5 465 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 SMOC2Q9H3U7 446 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 ZSWIM4Q9H7M6 989 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 SFXN1Q9H9B4 322 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 RSAD1Q9HA92 442 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 DNAJB4Q9UDY4 337 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 CDH22Q9UJ99 828 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 TPRP12270 2363 aaKnown RBP8.5□□□□□ -1.05
NEK3-201ENST00000550331 EPG5Q9HCE0 2579 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 NCOR2Q9Y618 2525 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 DMXL1Q9Y485 3027 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 INPPL1O15357 1258 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 MARCH6O60337 910 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 B4GALT3O60512 393 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 ADAM23O75077 832 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 DDHD2O94830 711 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 ERLIN2O94905 339 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 LYPLA2O95372 231 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 BAG4O95429 457 aaKnown RBP8.49□□□□□ -1.05
NEK3-201ENST00000550331 ALDH2P05091 517 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 SRGAP2CP0DJJ0 459 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 PRKCSHP14314 528 aaPredicted RBP8.49□□□□□ -1.05
NEK3-201ENST00000550331 EPCAMP16422 314 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 AXLP30530 894 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 HOXA11P31270 313 aaPredicted RBP8.49□□□□□ -1.05
NEK3-201ENST00000550331 ANAPC15P60006 121 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 POU5F1BQ06416 359 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 MXD4Q14582 209 aaPredicted RBP8.49□□□□□ -1.05
NEK3-201ENST00000550331 ANKRD1Q15327 319 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 UBXN11Q5T124 520 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 NCAPH2Q6IBW4 605 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 NOTUMQ6P988 496 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 BRICD5Q6PL45 260 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 CABP7Q86V35 215 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 ZNF280BQ86YH2 543 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 KRTAP1-3Q8IUG1 177 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 C12orf76Q8N812 135 aaPredicted RBP8.49□□□□□ -1.05
NEK3-201ENST00000550331 TNFRSF25Q93038 417 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 CCDC51Q96ER9 411 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 DYDC2Q96IM9 177 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 FAM193BQ96PV7 902 aaPredicted RBP8.49□□□□□ -1.05
NEK3-201ENST00000550331 VN1R3Q9BXE9 311 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 GBP3Q9H0R5 595 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 MINDY3Q9H8M7 445 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 MRPL17Q9NRX2 175 aaKnown RBP8.49□□□□□ -1.05
NEK3-201ENST00000550331 RGL1Q9NZL6 768 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 ORC3Q9UBD5 711 aaPredicted RBP8.49□□□□□ -1.05
NEK3-201ENST00000550331 DBR1Q9UK59 544 aaKnown RBP8.49□□□□□ -1.05
NEK3-201ENST00000550331 TPCN1Q9ULQ1 816 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 SSX2IPQ9Y2D8 614 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 SLC27A5Q9Y2P5 690 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 EVPLQ92817 2033 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 CEP250Q9BV73 2442 aa8.49□□□□□ -1.05
NEK3-201ENST00000550331 MED19A0JLT2 244 aaPredicted RBP8.48□□□□□ -1.05
NEK3-201ENST00000550331 NRP1O14786 923 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 TSPAN1O60635 241 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 LILRB3O75022 631 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 SLITRK3O94933 977 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 CTDNEP1O95476 244 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 POMCP01189 267 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 SOD2P04179 222 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 ASGR2P07307 311 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 CNPP09543 421 aaKnown RBP8.48□□□□□ -1.05
NEK3-201ENST00000550331 KRT2P35908 639 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 CLCN4P51793 760 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 CLCN5P51795 746 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 AFF1P51825 1210 aaKnown RBP8.48□□□□□ -1.05
NEK3-201ENST00000550331 PTENP60484 403 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 CYP4A11Q02928 519 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 NCBP1Q09161 790 aaKnown RBP8.48□□□□□ -1.05
NEK3-201ENST00000550331 TFDP1Q14186 410 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 CTTNQ14247 550 aaKnown RBP8.48□□□□□ -1.05
NEK3-201ENST00000550331 XKR9Q5GH70 373 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 EARS2Q5JPH6 523 aaKnown RBP8.48□□□□□ -1.05
NEK3-201ENST00000550331 ELMSAN1Q6PJG2 1045 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 TMC5Q6UXY8 1006 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 C15orf39Q6ZRI6 1047 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 DGLUCYQ7Z3D6 616 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 GPR149Q86SP6 731 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 TPH2Q8IWU9 490 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 RNF168Q8IYW5 571 aaPredicted RBP8.48□□□□□ -1.05
NEK3-201ENST00000550331 SMG8Q8ND04 991 aaKnown RBP8.48□□□□□ -1.05
NEK3-201ENST00000550331 FLCNQ8NFG4 579 aa8.48□□□□□ -1.05
NEK3-201ENST00000550331 CMASQ8NFW8 434 aaPredicted RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms