RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 PJA1Q8NG27 643 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 ZFP42Q96MM3 310 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 TEKT3Q9BXF9 490 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 NIFKQ9BYG3 293 aaKnown RBP11.77□□□□□ -0.53
VPS29-208ENST00000550267 RHOBTB2Q9BYZ6 727 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 INO80BQ9C086 356 aaPredicted RBP11.77□□□□□ -0.53
VPS29-208ENST00000550267 ZMYND12Q9H0C1 365 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 RSAD1Q9HA92 442 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 PIDD1Q9HB75 910 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 C6orf50Q9HD87 102 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 PRG3Q9Y2Y8 225 aaPredicted RBP11.77□□□□□ -0.53
VPS29-208ENST00000550267 ZNF292O60281 2723 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 MYH9P35579 1960 aaKnown RBP11.76□□□□□ -0.53
VPS29-208ENST00000550267 KLF18A0A0U1RQI7 1052 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 ANHXE9PGG2 379 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 H3BM21 787 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 LAMP2P13473 410 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 SFNP31947 248 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 ADD1P35611 737 aaKnown RBP11.76□□□□□ -0.53
VPS29-208ENST00000550267 OR1G1P47890 313 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 GLUD2P49448 558 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 JAK3P52333 1124 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 EXOSC10Q01780 885 aaKnown RBP11.76□□□□□ -0.53
VPS29-208ENST00000550267 HTR4Q13639 388 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 XKR3Q5GH77 459 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 LRCH2Q5VUJ6 765 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 KIAA0319Q5VV43 1072 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 ELMSAN1Q6PJG2 1045 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 PALB2Q86YC2 1186 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 SLC5A5Q92911 643 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 RIT2Q99578 217 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 ESYT1Q9BSJ8 1104 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 RXFP1Q9HBX9 757 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 SLC2A4RGQ9NR83 387 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 AGPAT5Q9NUQ2 364 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 NCDNQ9UBB6 729 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 DPP7Q9UHL4 492 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 NAP1L2Q9ULW6 460 aaPredicted RBP11.76□□□□□ -0.53
VPS29-208ENST00000550267 SSX2IPQ9Y2D8 614 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 NUMBLQ9Y6R0 609 aa11.76□□□□□ -0.53
VPS29-208ENST00000550267 COL4A3Q01955 1670 aa11.75□□□□□ -0.53
VPS29-208ENST00000550267 F8W810 466 aa11.75□□□□□ -0.53
VPS29-208ENST00000550267 MAFO75444 373 aaPredicted RBP11.75□□□□□ -0.53
VPS29-208ENST00000550267 STARD6P59095 220 aa11.75□□□□□ -0.53
VPS29-208ENST00000550267 UBXN11Q5T124 520 aa11.75□□□□□ -0.53
VPS29-208ENST00000550267 MIER3Q7Z3K6 550 aa11.75□□□□□ -0.53
VPS29-208ENST00000550267 GLYCTKQ8IVS8 523 aa11.75□□□□□ -0.53
VPS29-208ENST00000550267 RNF168Q8IYW5 571 aaPredicted RBP11.75□□□□□ -0.53
VPS29-208ENST00000550267 CCDC136Q96JN2 1154 aa11.75□□□□□ -0.53
VPS29-208ENST00000550267 B3GALT6Q96L58 329 aa11.75□□□□□ -0.53
VPS29-208ENST00000550267 RPP25Q9BUL9 199 aaKnown RBP11.75□□□□□ -0.53
VPS29-208ENST00000550267 NT5C3AQ9H0P0 336 aa11.75□□□□□ -0.53
VPS29-208ENST00000550267 IFT122Q9HBG6 1241 aa11.75□□□□□ -0.53
VPS29-208ENST00000550267 ANO2Q9NQ90 1003 aa11.75□□□□□ -0.53
VPS29-208ENST00000550267 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.75□□□□□ -0.53
VPS29-208ENST00000550267 KANSL3Q9P2N6 904 aa11.75□□□□□ -0.53
VPS29-208ENST00000550267 CNTNAP2Q9UHC6 1331 aa11.75□□□□□ -0.53
VPS29-208ENST00000550267 ZFHX4Q86UP3 3567 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 TGM5O43548 720 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 GAS2O43903 313 aaKnown RBP11.74□□□□□ -0.53
VPS29-208ENST00000550267 PSMD10O75832 226 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 PAPLNO95428 1278 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 EFEMP2O95967 443 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 LORP23490 312 aaPredicted RBP11.74□□□□□ -0.53
VPS29-208ENST00000550267 GNA11P29992 359 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 ATXN1P54253 815 aaKnown RBP11.74□□□□□ -0.53
VPS29-208ENST00000550267 GPC5P78333 572 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 DSG1Q02413 1049 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 SNW1Q13573 536 aaKnown RBP11.74□□□□□ -0.53
VPS29-208ENST00000550267 AMHR2Q16671 573 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 PLA2G4FQ68DD2 849 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 DHX32Q7L7V1 743 aaKnown RBP11.74□□□□□ -0.53
VPS29-208ENST00000550267 COLGALT2Q8IYK4 626 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 ZSCAN1Q8NBB4 408 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 RDM1Q8NG50 284 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 CCDC12Q8WUD4 166 aaPredicted RBP11.74□□□□□ -0.53
VPS29-208ENST00000550267 HDAC7Q8WUI4 952 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 FGF14Q92915 247 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 PHKBQ93100 1093 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 PLEKHA4Q9H4M7 779 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 MINDY3Q9H8M7 445 aa11.74□□□□□ -0.53
VPS29-208ENST00000550267 SPATA6Q9NWH7 488 aaPredicted RBP11.74□□□□□ -0.53
VPS29-208ENST00000550267 KANSL1LA0AUZ9 987 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 LAMTOR5O43504 91 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 ITGA4P13612 1032 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 NCLP19338 710 aaKnown RBP11.73□□□□□ -0.53
VPS29-208ENST00000550267 FSHRP23945 695 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 HOXA11P31270 313 aaPredicted RBP11.73□□□□□ -0.53
VPS29-208ENST00000550267 CSTF1Q05048 431 aaKnown RBP11.73□□□□□ -0.53
VPS29-208ENST00000550267 NNTQ13423 1086 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 ADCK5Q3MIX3 580 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 PARM1Q6UWI2 310 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 B3GNT9Q6UX72 402 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 ANO5Q75V66 913 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 SMG8Q8ND04 991 aaKnown RBP11.73□□□□□ -0.53
VPS29-208ENST00000550267 SHDQ96IW2 340 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 CHST7Q9NS84 486 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 MIOSQ9NXC5 875 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 ZDHHC7Q9NXF8 308 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 FBXO4Q9UKT5 387 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms