RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 NT5C1BQ96P26 610 aa11.95□□□□□ -0.5
CUX1-212ENST00000547394 UBXN6Q9BZV1 441 aa11.95□□□□□ -0.5
CUX1-212ENST00000547394 DHX33Q9H6R0 707 aaKnown RBP11.95□□□□□ -0.5
CUX1-212ENST00000547394 TMEM8AQ9HCN3 771 aa11.95□□□□□ -0.5
CUX1-212ENST00000547394 AMACRQ9UHK6 382 aa11.95□□□□□ -0.5
CUX1-212ENST00000547394 NOCTQ9UK39 431 aaKnown RBP11.95□□□□□ -0.5
CUX1-212ENST00000547394 HPCAL4Q9UM19 191 aa11.95□□□□□ -0.5
CUX1-212ENST00000547394 SPDYE5A6NIY4 337 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 B4GALT5O43286 388 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 GJB6O95452 261 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 FGGP02679 453 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 CYP11B1P15538 503 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 CLCN3P51790 818 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 FMO1Q01740 532 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 KCTD2Q14681 263 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 ZNF394Q53GI3 561 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 RHPN2Q8IUC4 686 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 CEP120Q8N960 986 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 RNF149Q8NC42 400 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 MFSD14AQ96MC6 490 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 MMP19Q99542 508 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 RBAKQ9NYW8 714 aaPredicted RBP11.94□□□□□ -0.5
CUX1-212ENST00000547394 TRPC6Q9Y210 931 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 HTTP42858 3142 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 OTOFQ9HC10 1997 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 PTPRFP10586 1907 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 KRIT1O00522 736 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 MYBPC2Q14324 1141 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 SKIDA1Q1XH10 827 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 BRDTQ58F21 947 aaPredicted RBP11.94□□□□□ -0.5
CUX1-212ENST00000547394 C10orf76Q5T2E6 689 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 CCDC70Q6NSX1 233 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 FAM71AQ8IYT1 594 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 CASKIN2Q8WXE0 1202 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 CEP89Q96ST8 783 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 TIPINQ9BVW5 301 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 AZI2Q9H6S1 392 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 AGTPBP1Q9UPW5 1226 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 WDR90Q96KV7 1748 aa11.94□□□□□ -0.5
CUX1-212ENST00000547394 ATG7O95352 703 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 HLA-DRAP01903 254 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 TMEM253P0C7T8 217 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 PIK3CAP42336 1068 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 DNAJC21Q5F1R6 531 aaKnown RBP11.93□□□□□ -0.5
CUX1-212ENST00000547394 GPAT2Q6NUI2 795 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 DPY19L2Q6NUT2 758 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 APOBEC3GQ9HC16 384 aaKnown RBP11.93□□□□□ -0.5
CUX1-212ENST00000547394 AMFRQ9UKV5 643 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 ALG6Q9Y672 507 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 TARSL2A2RTX5 802 aaKnown RBP11.93□□□□□ -0.5
CUX1-212ENST00000547394 VNN1O95497 513 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 ZBTB48P10074 688 aaPredicted RBP11.93□□□□□ -0.5
CUX1-212ENST00000547394 TXNP10599 105 aaKnown RBP11.93□□□□□ -0.5
CUX1-212ENST00000547394 EDNRBP24530 442 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 ICAM3P32942 547 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 ARL2P36404 184 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 MFAP3P55082 362 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 DHX37Q8IY37 1157 aaKnown RBP11.93□□□□□ -0.5
CUX1-212ENST00000547394 THNSL1Q8IYQ7 743 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 SEPT1Q8WYJ6 367 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 SHC3Q92529 594 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 FBXL18Q96ME1 805 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 ERVK-5Q9HDB9 667 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 STXBP5LQ9Y2K9 1186 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 MYPNQ86TC9 1320 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 ANKRD62A6NC57 917 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 DKC1O60832 514 aaKnown RBP eCLIP11.93□□□□□ -0.51e-7■■■■■ 34.5
CUX1-212ENST00000547394 CD58P19256 250 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 HLTFQ14527 1009 aaKnown RBP eCLIP11.93□□□□□ -0.5
CUX1-212ENST00000547394 TMEM132AQ24JP5 1023 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 METTL7BQ6UX53 244 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 SCARA5Q6ZMJ2 495 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 AENQ8WTP8 325 aaKnown RBP11.93□□□□□ -0.5
CUX1-212ENST00000547394 PSPC1Q8WXF1 523 aaKnown RBP11.93□□□□□ -0.5
CUX1-212ENST00000547394 ZNF653Q96CK0 615 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 GPR20Q99678 358 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 TRIM51Q9BSJ1 452 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 DPH5Q9H2P9 285 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 RNPEPQ9H4A4 650 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 RABEP2Q9H5N1 569 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 TSKSQ9UJT2 592 aa11.93□□□□□ -0.5
CUX1-212ENST00000547394 TCRBV7S2A1N4TA0A589 114 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 ZBTB42B2RXF5 422 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 SART1O43290 800 aaKnown RBP11.92□□□□□ -0.5
CUX1-212ENST00000547394 EXTL3O43909 919 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 STAM2O75886 525 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 SYF2O95926 243 aaKnown RBP11.92□□□□□ -0.5
CUX1-212ENST00000547394 CST3P01034 146 aaPredicted RBP11.92□□□□□ -0.5
CUX1-212ENST00000547394 ZNF286BP0CG31 522 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 LMAN1P49257 510 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 ERVK-9P63128 1117 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 PDE4CQ08493 712 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 ORC1Q13415 861 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 GPR162Q16538 588 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 TMEM192Q8IY95 271 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 NUP85Q9BW27 656 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 MINDY3Q9H8M7 445 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 RNF19AQ9NV58 838 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 ADAM21Q9UKJ8 722 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 ZC3H4Q9UPT8 1303 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms