RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 ARHGEF18Q6ZSZ5 1173 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 RAPH1Q70E73 1250 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 ZNF467Q7Z7K2 595 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 IFT20Q8IY31 132 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 RAB17Q9H0T7 212 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 EHD2Q9NZN4 543 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 IRS2Q9Y4H2 1338 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 IKBKBO14920 756 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 MCF2LO15068 1137 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 GPC4O75487 556 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 ZMYND10O75800 440 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 MYBL1P10243 752 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 THPOP40225 353 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 GARSP41250 739 aaKnown RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 USP11P51784 963 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 ATXN3P54252 364 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 CACNB2Q08289 660 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 TMC7Q7Z402 723 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 CHST13Q8NET6 341 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 CNOT6LQ96LI5 555 aaKnown RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 GSDMAQ96QA5 445 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 HTATIP2Q9BUP3 242 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 MAN1B1Q9UKM7 699 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 SNUPNO95149 360 aaKnown RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 EFNA5P52803 228 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 PPP2R5EQ16537 467 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 RAB44Q7Z6P3 723 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 ADAT2Q7Z6V5 191 aaKnown RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 SPATA2LQ8IUW3 424 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 MTMR14Q8NCE2 650 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 DDX50Q9BQ39 737 aaKnown RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 FAM213AQ9BRX8 229 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 TUBGCP2Q9BSJ2 902 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 POLR3FQ9H1D9 316 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 MFSD1Q9H3U5 465 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 HMX1Q9NP08 348 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 OLA1Q9NTK5 396 aaKnown RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 SUCLA2Q9P2R7 463 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-218ENST00000545889 TJP2Q9UDY2 1190 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 MYH2Q9UKX2 1941 aa9.16□□□□□ -0.94
CLIP1-218ENST00000545889 PFASO15067 1338 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 LRRD1A4D1F6 860 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 C2CD2LO14523 706 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 TBC1D12O60347 775 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 HPDP32754 393 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-218ENST00000545889 PAK2Q13177 524 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 KIAA1755Q5JYT7 1200 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 ARL10Q8N8L6 244 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 XXYLT1Q8NBI6 393 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 RIN2Q8WYP3 895 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-218ENST00000545889 TNIP3Q96KP6 325 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 PURBQ96QR8 312 aaKnown RBP9.15□□□□□ -0.94
CLIP1-218ENST00000545889 NUDCD1Q96RS6 583 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 TMEM39AQ9NV64 488 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 LRG1P02750 347 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 MYBP10242 640 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 ITGA4P13612 1032 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 DYNLT1P63172 113 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 CCZ1BP86790 482 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 CCZ1P86791 482 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-218ENST00000545889 FUT2Q10981 343 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 NOGQ13253 232 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 NXNQ6DKJ4 435 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 BZW1Q7L1Q6 419 aaKnown RBP9.15□□□□□ -0.94
CLIP1-218ENST00000545889 KCTD6Q8NC69 237 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 TMEM35BQ8NCS4 154 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 SIK2Q9H0K1 926 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 IMPACTQ9P2X3 320 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 ZC3H4Q9UPT8 1303 aaKnown RBP9.15□□□□□ -0.94
CLIP1-218ENST00000545889 EP400Q96L91 3159 aa9.15□□□□□ -0.94
CLIP1-218ENST00000545889 MAP1BP46821 2468 aaKnown RBP9.15□□□□□ -0.95
CLIP1-218ENST00000545889 SGK1O00141 431 aa9.15□□□□□ -0.95
CLIP1-218ENST00000545889 VWA5AO00534 786 aa9.15□□□□□ -0.95
CLIP1-218ENST00000545889 PQBP1O60828 265 aaKnown RBP9.15□□□□□ -0.95
CLIP1-218ENST00000545889 USP2O75604 605 aaPredicted RBP9.15□□□□□ -0.95
CLIP1-218ENST00000545889 ASMTLO95671 621 aa9.15□□□□□ -0.95
CLIP1-218ENST00000545889 SLC8A1P32418 973 aa9.15□□□□□ -0.95
CLIP1-218ENST00000545889 PTPAQ15257 358 aa9.15□□□□□ -0.95
CLIP1-218ENST00000545889 ARHGAP15Q53QZ3 475 aa9.15□□□□□ -0.95
CLIP1-218ENST00000545889 XKR3Q5GH77 459 aa9.15□□□□□ -0.95
CLIP1-218ENST00000545889 CYP4A22Q5TCH4 519 aa9.15□□□□□ -0.95
CLIP1-218ENST00000545889 SEPT8Q92599 483 aa9.15□□□□□ -0.95
CLIP1-218ENST00000545889 DHTKD1Q96HY7 919 aaPredicted RBP9.15□□□□□ -0.95
CLIP1-218ENST00000545889 RILPQ96NA2 401 aa9.15□□□□□ -0.95
CLIP1-218ENST00000545889 ENTPD7Q9NQZ7 604 aa9.15□□□□□ -0.95
CLIP1-218ENST00000545889 PPP2R2CQ9Y2T4 447 aa9.15□□□□□ -0.95
CLIP1-218ENST00000545889 LTBP3Q9NS15 1303 aa9.15□□□□□ -0.95
CLIP1-218ENST00000545889 ATICP31939 592 aa9.14□□□□□ -0.95
CLIP1-218ENST00000545889 GRIK1P39086 918 aa9.14□□□□□ -0.95
CLIP1-218ENST00000545889 ALDH1A3P47895 512 aa9.14□□□□□ -0.95
CLIP1-218ENST00000545889 HERVK_113P62684 666 aa9.14□□□□□ -0.95
CLIP1-218ENST00000545889 LAMC2Q13753 1193 aa9.14□□□□□ -0.95
CLIP1-218ENST00000545889 DEFB128Q7Z7B8 93 aa9.14□□□□□ -0.95
CLIP1-218ENST00000545889 TTC39CQ8N584 583 aa9.14□□□□□ -0.95
CLIP1-218ENST00000545889 P2RX5Q93086 422 aa9.14□□□□□ -0.95
CLIP1-218ENST00000545889 HPS3Q969F9 1004 aa9.14□□□□□ -0.95
CLIP1-218ENST00000545889 SH3KBP1Q96B97 665 aa9.14□□□□□ -0.95
CLIP1-218ENST00000545889 PPP1R12CQ9BZL4 782 aa9.14□□□□□ -0.95
CLIP1-218ENST00000545889 ASCC2Q9H1I8 757 aaPredicted RBP9.14□□□□□ -0.95
CLIP1-218ENST00000545889 L2HGDHQ9H9P8 463 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms