RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 RECQL4O94761 1208 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 CSPG5O95196 566 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 MCF2P10911 925 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 GRM5P41594 1212 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 GTF2BQ00403 316 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 COASYQ13057 564 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 STK38Q15208 465 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 E2F4Q16254 413 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 PUS10Q3MIT2 529 aaKnown RBP12.54□□□□□ -0.4
YBX3-216ENST00000544622 FOXD4L5Q5VV16 416 aaPredicted RBP12.54□□□□□ -0.4
YBX3-216ENST00000544622 RRAGBQ5VZM2 374 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 PLPP4Q5VZY2 271 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 SHC4Q6S5L8 630 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 MPZL3Q6UWV2 235 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 CCDC73Q6ZRK6 1079 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 HAUS6Q7Z4H7 955 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 CEP120Q8N960 986 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 ADAMTS19Q8TE59 1207 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 FOXD4L4Q8WXT5 416 aaPredicted RBP12.54□□□□□ -0.4
YBX3-216ENST00000544622 ZBTB45Q96K62 511 aaPredicted RBP12.54□□□□□ -0.4
YBX3-216ENST00000544622 STRA6Q9BX79 667 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 HAPLN2Q9GZV7 340 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 CHST7Q9NS84 486 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 RCOR1Q9UKL0 485 aa12.54□□□□□ -0.4
YBX3-216ENST00000544622 FSD2A1L4K1 749 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 FRMD3A2A2Y4 597 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 H0YCG3 227 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 CUTAO60888 179 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 PIGRP01833 764 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 SOD2P04179 222 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 THP07101 528 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 TXLNAP40222 546 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 OR1G1P47890 313 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 RBM10P98175 930 aaKnown RBP12.53□□□□□ -0.4
YBX3-216ENST00000544622 DNM1Q05193 864 aaKnown RBP12.53□□□□□ -0.4
YBX3-216ENST00000544622 MCL1Q07820 350 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 TUSC3Q13454 348 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 SMC1AQ14683 1233 aaKnown RBP12.53□□□□□ -0.4
YBX3-216ENST00000544622 PTPN14Q15678 1187 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 PTCRAQ6ISU1 281 aaPredicted RBP12.53□□□□□ -0.4
YBX3-216ENST00000544622 TAS1R1Q7RTX1 841 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 MYCT1Q8N699 235 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 RASSF8Q8NHQ8 419 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 KCNG4Q8TDN1 519 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 DDX12PQ92771 950 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 PPP1R10Q96QC0 940 aaKnown RBP12.53□□□□□ -0.4
YBX3-216ENST00000544622 UHRF1Q96T88 793 aaPredicted RBP12.53□□□□□ -0.4
YBX3-216ENST00000544622 PAAF1Q9BRP4 392 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 PANK2Q9BZ23 570 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 ENTPD7Q9NQZ7 604 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 TBX20Q9UMR3 447 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 PCDHA7Q9UN72 937 aa12.53□□□□□ -0.4
YBX3-216ENST00000544622 MYH15Q9Y2K3 1946 aa12.52□□□□□ -0.4
YBX3-216ENST00000544622 SMIM28A0A1B0GU29 152 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 MBTPS2O43462 519 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 FAM189A1O60320 539 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 CLASP2O75122 1294 aaKnown RBP12.52□□□□□ -0.41
YBX3-216ENST00000544622 PPP1R37O75864 691 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 CXCL14O95715 111 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 IL9P15248 144 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 STRN3Q13033 797 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 SMAD2Q15796 467 aaKnown RBP12.52□□□□□ -0.41
YBX3-216ENST00000544622 TMEM132AQ24JP5 1023 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 ZNF568Q3ZCX4 644 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 KIAA0319Q5VV43 1072 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 SV2BQ7L1I2 683 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 ZNF720Q7Z2F6 126 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 APBB1IPQ7Z5R6 666 aaPredicted RBP12.52□□□□□ -0.41
YBX3-216ENST00000544622 SMRP1Q8NCR6 262 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 NECAB3Q96P71 396 aaPredicted RBP12.52□□□□□ -0.41
YBX3-216ENST00000544622 GPR62Q9BZJ7 368 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 S1PR5Q9H228 398 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 KBTBD4Q9NVX7 518 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 CFAP45Q9UL16 551 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 GDAQ9Y2T3 454 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 PRG3Q9Y2Y8 225 aaPredicted RBP12.52□□□□□ -0.41
YBX3-216ENST00000544622 HCFC2Q9Y5Z7 792 aa12.52□□□□□ -0.41
YBX3-216ENST00000544622 CLDN3O15551 220 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 NR1I2O75469 434 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 FAM13AO94988 1023 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 NMT1P30419 496 aaKnown RBP12.51□□□□□ -0.41
YBX3-216ENST00000544622 ABCD1P33897 745 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 NDUFV1P49821 464 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 SLC10A6Q3KNW5 377 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 FOXD4L6Q3SYB3 417 aaPredicted RBP12.51□□□□□ -0.41
YBX3-216ENST00000544622 SLC39A4Q6P5W5 647 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 SYCE2Q6PIF2 218 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 CD300LGQ6UXG3 332 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 FOXD4L3Q6VB84 417 aaPredicted RBP12.51□□□□□ -0.41
YBX3-216ENST00000544622 DYMQ7RTS9 669 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 ZBTB33Q86T24 672 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 MAP4K3Q8IVH8 894 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 FAM178BQ8IXR5 827 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 GPR65Q8IYL9 337 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 AUTS2Q8WXX7 1259 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 ZMAT2Q96NC0 199 aaKnown RBP12.51□□□□□ -0.41
YBX3-216ENST00000544622 RPS6KC1Q96S38 1066 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 COLEC11Q9BWP8 271 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 RXFP1Q9HBX9 757 aa12.51□□□□□ -0.41
YBX3-216ENST00000544622 CNTN3Q9P232 1028 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms