RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 XKR3Q5GH77 459 aa19.38■□□□□ 0.69
VIM-209ENST00000544301 DDX1Q92499 740 aaKnown RBP19.38■□□□□ 0.69
VIM-209ENST00000544301 DHX38Q92620 1227 aaKnown RBP19.38■□□□□ 0.69
VIM-209ENST00000544301 DPH5Q9H2P9 285 aa19.38■□□□□ 0.69
VIM-209ENST00000544301 NFS1Q9Y697 457 aa19.38■□□□□ 0.69
VIM-209ENST00000544301 GRIN2DO15399 1336 aa19.38■□□□□ 0.69
VIM-209ENST00000544301 SYNGAP1Q96PV0 1343 aa19.38■□□□□ 0.69
VIM-209ENST00000544301 SPDYE16A6NNV3 312 aaPredicted RBP19.37■□□□□ 0.69
VIM-209ENST00000544301 PEX5P50542 639 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 GNGT1P63211 74 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 DR1Q01658 176 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 SP2Q02086 613 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 MTERF2Q49AM1 385 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 CEP85LQ5SZL2 805 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 TRPM4Q8TD43 1214 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 MORC4Q8TE76 937 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 ATP8B4Q8TF62 1192 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 ATP6V1G3Q96LB4 118 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 NUP85Q9BW27 656 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 RAB17Q9H0T7 212 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 HOXC10Q9NYD6 342 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 TRPC6Q9Y210 931 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 ZNF564Q8TBZ8 553 aaPredicted RBP19.37■□□□□ 0.69
VIM-209ENST00000544301 CD101Q93033 1021 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 WNT8AQ9H1J5 351 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 GTF3C4Q9UKN8 822 aa19.37■□□□□ 0.69
VIM-209ENST00000544301 H0YCG3 227 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 EIF3HO15372 352 aaKnown RBP eCLIP19.36■□□□□ 0.69
VIM-209ENST00000544301 GRIN3BO60391 1043 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 EMC10Q5UCC4 262 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 DUPD1Q68J44 220 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 KDM7AQ6ZMT4 941 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 ZNF516Q92618 1163 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 ZNF653Q96CK0 615 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 PI4K2AQ9BTU6 479 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 MAF1Q9H063 256 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 TMBIM4Q9HC24 238 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 AFG3L2Q9Y4W6 797 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 FAM187AA6NFU0 413 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 TULP2O00295 520 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 EXTL3O43909 919 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 ATP4AP20648 1035 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 GCNT1Q02742 428 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 DHX34Q14147 1143 aaKnown RBP19.36■□□□□ 0.69
VIM-209ENST00000544301 EMC2Q15006 297 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 TTC19Q6DKK2 380 aaPredicted RBP19.36■□□□□ 0.69
VIM-209ENST00000544301 ACAD10Q6JQN1 1059 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 C15orf39Q6ZRI6 1047 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 TMC3Q7Z5M5 1100 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 GLG1Q92896 1179 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 BTBD6Q96KE9 485 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 FAM84AQ96KN4 292 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 ERP44Q9BS26 406 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 TRIM31Q9BZY9 425 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 MTFR1LQ9H019 292 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 RSPH14Q9UHP6 348 aa19.36■□□□□ 0.69
VIM-209ENST00000544301 LCTP09848 1927 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 A6NNZ2 444 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 HMGB1P1B2RPK0 211 aaPredicted RBP19.35■□□□□ 0.69
VIM-209ENST00000544301 HSPA6P17066 643 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 ABCD1P33897 745 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 CTNNA1P35221 906 aaKnown RBP19.35■□□□□ 0.69
VIM-209ENST00000544301 LIG4P49917 911 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 MTMR3Q13615 1198 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 TUBB8Q3ZCM7 444 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 NOL9Q5SY16 702 aaKnown RBP19.35■□□□□ 0.69
VIM-209ENST00000544301 CYFIP1Q7L576 1253 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 ENOSF1Q7L5Y1 443 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 CPNE8Q86YQ8 564 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 OR2W6PQ8NHA6 318 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 ZNF526Q8TF50 670 aaPredicted RBP19.35■□□□□ 0.69
VIM-209ENST00000544301 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.35■□□□□ 0.69
VIM-209ENST00000544301 UVRAGQ9P2Y5 699 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 MYPNQ86TC9 1320 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 SSC5DA1L4H1 1573 aa19.35■□□□□ 0.69
VIM-209ENST00000544301 ZNFX1Q9P2E3 1918 aaKnown RBP19.35■□□□□ 0.69
VIM-209ENST00000544301 PHF2O75151 1096 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 ZC3H11AO75152 810 aaKnown RBP eCLIP19.34■□□□□ 0.69
VIM-209ENST00000544301 KRT5P13647 590 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 CTNNA2P26232 953 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 ATP1A2P50993 1020 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 POLGP54098 1239 aaPredicted RBP19.34■□□□□ 0.69
VIM-209ENST00000544301 CLDN10P78369 228 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 STXBP2Q15833 593 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 CLEC16AQ2KHT3 1053 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 SRLQ86TD4 932 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 PRELID2Q8N945 189 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 KIAA1586Q9HCI6 787 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 GGA3Q9NZ52 723 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 LCMT1Q9UIC8 334 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 MAFBQ9Y5Q3 323 aaPredicted RBP19.34■□□□□ 0.69
VIM-209ENST00000544301 GOLGA6L10A6NI86 522 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 ATG7O95352 703 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 PYGMP11217 842 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 NR1D1P20393 614 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 ICAM3P32942 547 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 ZNF844Q08AG5 666 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 FSTL1Q12841 308 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 PDCLQ13371 301 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 PSMD6Q15008 389 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms