RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 RGS18Q9NS28 235 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 SAMSN1Q9NSI8 373 aaKnown RBP11.51□□□□□ -0.57
VPS33A-204ENST00000540669 RNF19AQ9NV58 838 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 AGO2Q9UKV8 859 aaKnown RBP11.51□□□□□ -0.57
VPS33A-204ENST00000540669 ZMYND8Q9ULU4 1186 aaPredicted RBP11.51□□□□□ -0.57
VPS33A-204ENST00000540669 GINS2Q9Y248 185 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 KIAA1671Q9BY89 1806 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 TDRD15B5MCY1 1934 aaKnown RBP11.5□□□□□ -0.57
VPS33A-204ENST00000540669 A0A0U1RQF3 1178 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.5□□□□□ -0.57
VPS33A-204ENST00000540669 TTC26A0AVF1 554 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 CLIC2O15247 247 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 RPL13P26373 211 aaKnown RBP11.5□□□□□ -0.57
VPS33A-204ENST00000540669 EEF1GP26641 437 aaKnown RBP11.5□□□□□ -0.57
VPS33A-204ENST00000540669 ENOX2Q16206 610 aaKnown RBP11.5□□□□□ -0.57
VPS33A-204ENST00000540669 SNRNP35Q16560 246 aaKnown RBP11.5□□□□□ -0.57
VPS33A-204ENST00000540669 KYAT1Q16773 422 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 RASIP1Q5U651 963 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 CNKSR3Q6P9H4 555 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 SARM1Q6SZW1 724 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 ALKAL1Q6UXT8 129 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 C16orf59Q7L2K0 433 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 CDR2LQ86X02 465 aaPredicted RBP11.5□□□□□ -0.57
VPS33A-204ENST00000540669 TMEM192Q8IY95 271 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 SYCP3Q8IZU3 236 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 SLC35C1Q96A29 364 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 SNX27Q96L92 541 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 CNOT6LQ96LI5 555 aaKnown RBP11.5□□□□□ -0.57
VPS33A-204ENST00000540669 MSTO1Q9BUK6 570 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 NXF3Q9H4D5 531 aaKnown RBP11.5□□□□□ -0.57
VPS33A-204ENST00000540669 KIAA1586Q9HCI6 787 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 FAM105AQ9NUU6 356 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 FANCLQ9NW38 375 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 ANKFY1Q9P2R3 1169 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 LIMA1Q9UHB6 759 aaKnown RBP11.5□□□□□ -0.57
VPS33A-204ENST00000540669 TSC2P49815 1807 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 CHD7Q9P2D1 2997 aa11.5□□□□□ -0.57
VPS33A-204ENST00000540669 TRANK1O15050 2925 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 CETN3O15182 167 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 PMM2O15305 246 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 GNA14O95837 355 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 LDHAP00338 332 aaKnown RBP11.49□□□□□ -0.57
VPS33A-204ENST00000540669 CLTAP09496 248 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 ATP1A3P13637 1013 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 SYN1P17600 705 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 PSMC2P35998 433 aaKnown RBP11.49□□□□□ -0.57
VPS33A-204ENST00000540669 TNFSF9P41273 254 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 CCL23P55773 120 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 CYP24A1Q07973 514 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 ADAM9Q13443 819 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 PSMD6Q15008 389 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 NAB2Q15742 525 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 MIIPQ5JXC2 388 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 C15orf39Q6ZRI6 1047 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 FRMD5Q7Z6J6 570 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 GSTCDQ8NEC7 633 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 CXorf38Q8TB03 319 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 TMC2Q8TDI7 906 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 PARD3BQ8TEW8 1205 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 POMGNT1Q8WZA1 660 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 SAAL1Q96ER3 474 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 BICD1Q96G01 975 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 SRRTQ9BXP5 876 aaKnown RBP11.49□□□□□ -0.57
VPS33A-204ENST00000540669 UBE2OQ9C0C9 1292 aaKnown RBP11.49□□□□□ -0.57
VPS33A-204ENST00000540669 MTIF3Q9H2K0 278 aaKnown RBP11.49□□□□□ -0.57
VPS33A-204ENST00000540669 ELAC1Q9H777 363 aaKnown RBP11.49□□□□□ -0.57
VPS33A-204ENST00000540669 IL23AQ9NPF7 189 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 C1orf112Q9NSG2 853 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 INTS13Q9NVM9 706 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 CNTN3Q9P232 1028 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 IPPQ9Y573 584 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 PTPRJQ12913 1337 aa11.49□□□□□ -0.57
VPS33A-204ENST00000540669 A0A1W2PPC1 479 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 SMTNL1A8MU46 457 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 AP5Z1O43299 807 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 BAIAP3O94812 1187 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 NPTXRO95502 500 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 KCNE1P15382 129 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 CSF2RAP15509 400 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 CYP2J2P51589 502 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 EPHB4P54760 987 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 SPAG1Q07617 926 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 BFSP1Q12934 665 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 HSP90AA2PQ14568 343 aaPredicted RBP11.48□□□□□ -0.57
VPS33A-204ENST00000540669 ZBTB6Q15916 424 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 SLC10A6Q3KNW5 377 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 TCP11X2Q5H9J9 407 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 AGMOQ6ZNB7 445 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 SLC24A5Q71RS6 500 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 INTS8Q75QN2 995 aaKnown RBP11.48□□□□□ -0.57
VPS33A-204ENST00000540669 ECHDC2Q86YB7 292 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 EFCAB13Q8IY85 973 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 FAM186BQ8IYM0 893 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 TMEM199Q8N511 208 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 SEPT8Q92599 483 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 EEF2KMTQ96G04 330 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 ADAM2Q99965 735 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 ADPGKQ9BRR6 497 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 PCIF1Q9H4Z3 704 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 METTL14Q9HCE5 456 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms