RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 NT5C2P49902 561 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 RNASELQ05823 741 aaKnown RBP13.81□□□□□ -0.2
MSH6-210ENST00000540021 MIGA2Q7L4E1 593 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 ARHGEF19Q8IW93 802 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 RSAD2Q8WXG1 361 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 DHX38Q92620 1227 aaKnown RBP13.81□□□□□ -0.2
MSH6-210ENST00000540021 GINM1Q9NU53 330 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.81□□□□□ -0.23e-10■■■■■ 28.1
MSH6-210ENST00000540021 CASZ1Q86V15 1759 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 ASTN1O14525 1302 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 ATXN2Q99700 1313 aaKnown RBP13.81□□□□□ -0.2
MSH6-210ENST00000540021 GSTA1P08263 222 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 PRKCIP41743 596 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 YWHAGP61981 247 aaKnown RBP eCLIP13.81□□□□□ -0.2
MSH6-210ENST00000540021 DLG4P78352 724 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 IRX4P78413 519 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 CDR2Q01850 454 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 COBLL1Q53SF7 1204 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 MDH1BQ5I0G3 518 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 CPNE8Q86YQ8 564 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 SLC5A5Q92911 643 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 ACSF2Q96CM8 615 aaPredicted RBP13.81□□□□□ -0.2
MSH6-210ENST00000540021 TMEM206Q9H813 350 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.81□□□□□ -0.2
MSH6-210ENST00000540021 BATF3Q9NR55 127 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 PFASO15067 1338 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 H0YGN5 161 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 ANXA13P27216 316 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 SMARCA1P28370 1054 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 STAT2P52630 851 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 NPEPPSP55786 919 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 SHROOM1Q2M3G4 852 aaPredicted RBP13.81□□□□□ -0.2
MSH6-210ENST00000540021 C6orf89Q6UWU4 347 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 KIFC3Q9BVG8 833 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 MTFR1LQ9H019 292 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 DDX4Q9NQI0 724 aaKnown RBP13.81□□□□□ -0.2
MSH6-210ENST00000540021 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.81□□□□□ -0.2
MSH6-210ENST00000540021 ANKFY1Q9P2R3 1169 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 AGAP1Q9UPQ3 857 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 NFS1Q9Y697 457 aa13.81□□□□□ -0.2
MSH6-210ENST00000540021 FAM47DPA6NHR8 397 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 DCTN3O75935 186 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 RALAP11233 206 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 ESRRAP11474 423 aaPredicted RBP13.8□□□□□ -0.2
MSH6-210ENST00000540021 BASP1P80723 227 aaKnown RBP13.8□□□□□ -0.2
MSH6-210ENST00000540021 ANKRD20A2Q5SQ80 823 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 ANKRD20A1Q5TYW2 823 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 BBOF1Q8ND07 529 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 HIPK4Q8NE63 616 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 SPIRE2Q8WWL2 714 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 WDR11Q9BZH6 1224 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 CHST7Q9NS84 486 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 ADAM22Q9P0K1 906 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 ANKRD63C9JTQ0 380 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 NDUFB10O96000 172 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 MAN1A1P33908 653 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 MMP13P45452 471 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 PDIA2Q13087 525 aaKnown RBP13.8□□□□□ -0.2
MSH6-210ENST00000540021 PHLDB3Q6NSJ2 640 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 METTL5Q9NRN9 209 aaKnown RBP13.8□□□□□ -0.2
MSH6-210ENST00000540021 PI4KBQ9UBF8 816 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 IPO5O00410 1097 aaKnown RBP13.8□□□□□ -0.2
MSH6-210ENST00000540021 CHKAP35790 457 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 PIK3CAP42336 1068 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 CPA2P48052 419 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 NCALDP61601 193 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 CFAP157Q5JU67 520 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 EIF1ADQ8N9N8 165 aaKnown RBP13.8□□□□□ -0.2
MSH6-210ENST00000540021 FAM84AQ96KN4 292 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 HSPBP1Q9NZL4 362 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 DLGAP2Q9P1A6 1054 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 SCOCQ9UIL1 159 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 COG5Q9UP83 839 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 NAALADL1Q9UQQ1 740 aa13.8□□□□□ -0.2
MSH6-210ENST00000540021 OPHN1O60890 802 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 CBX6O95503 412 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 KITP10721 976 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 EIF2AK2P19525 551 aaKnown RBP13.79□□□□□ -0.2
MSH6-210ENST00000540021 ITIH2P19823 946 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 CTCFP49711 727 aaPredicted RBP13.79□□□□□ -0.2
MSH6-210ENST00000540021 DMP1Q13316 513 aaPredicted RBP13.79□□□□□ -0.2
MSH6-210ENST00000540021 TMEM154Q6P9G4 183 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 HAUS6Q7Z4H7 955 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 TBC1D16Q8TBP0 767 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 PYROXD1Q8WU10 500 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 TRAIPQ9BWF2 469 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 USH1CQ9Y6N9 552 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 ARSEP51690 589 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 ATL2Q8NHH9 583 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.79□□□□□ -0.2
MSH6-210ENST00000540021 FAM213AQ9BRX8 229 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 ROPN1BQ9BZX4 212 aaPredicted RBP13.79□□□□□ -0.2
MSH6-210ENST00000540021 TDRD3Q9H7E2 651 aaKnown RBP13.79□□□□□ -0.2
MSH6-210ENST00000540021 DNAJC18Q9H819 358 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 ROPN1Q9HAT0 212 aaPredicted RBP13.79□□□□□ -0.2
MSH6-210ENST00000540021 GPRC5CQ9NQ84 441 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 KMT5AQ9NQR1 393 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 CCPG1Q9ULG6 757 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 PHTF1Q9UMS5 762 aa13.79□□□□□ -0.2
MSH6-210ENST00000540021 ECHS1P30084 290 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms