RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 NDC80O14777 642 aa10.68□□□□□ -0.7
TRAF1-202ENST00000540010 TRIM49P0CI25 452 aa10.68□□□□□ -0.7
TRAF1-202ENST00000540010 TRIM49CP0CI26 452 aa10.68□□□□□ -0.7
TRAF1-202ENST00000540010 EIF3BP55884 814 aaKnown RBP10.68□□□□□ -0.7
TRAF1-202ENST00000540010 PPP2R2AP63151 447 aa10.68□□□□□ -0.7
TRAF1-202ENST00000540010 DMP1Q13316 513 aaPredicted RBP10.68□□□□□ -0.7
TRAF1-202ENST00000540010 PLA2G4FQ68DD2 849 aa10.68□□□□□ -0.7
TRAF1-202ENST00000540010 ARHGEF18Q6ZSZ5 1173 aa10.68□□□□□ -0.7
TRAF1-202ENST00000540010 FRMD5Q7Z6J6 570 aa10.68□□□□□ -0.7
TRAF1-202ENST00000540010 ATP6V0A1Q93050 837 aa10.68□□□□□ -0.7
TRAF1-202ENST00000540010 HAUS1Q96CS2 278 aa10.68□□□□□ -0.7
TRAF1-202ENST00000540010 GBP5Q96PP8 586 aa10.68□□□□□ -0.7
TRAF1-202ENST00000540010 MPHOSPH6Q99547 160 aaKnown RBP10.68□□□□□ -0.7
TRAF1-202ENST00000540010 ADAM33Q9BZ11 813 aa10.68□□□□□ -0.7
TRAF1-202ENST00000540010 GABBR1Q9UBS5 961 aa10.68□□□□□ -0.7
TRAF1-202ENST00000540010 DMGDHQ9UI17 866 aaKnown RBP10.68□□□□□ -0.7
TRAF1-202ENST00000540010 ATP9AO75110 1047 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 ACTN1P12814 892 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 PEX3P56589 373 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 SLMAPQ14BN4 828 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 FRMPD4Q14CM0 1322 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 FIGNQ5HY92 759 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 TRIM59Q8IWR1 403 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 CCT8L2Q96SF2 557 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 WRAP73Q9P2S5 460 aaPredicted RBP10.67□□□□□ -0.7
TRAF1-202ENST00000540010 PCDHB4Q9Y5E5 795 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 PCDHA10Q9Y5I2 948 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 TARSL2A2RTX5 802 aaKnown RBP10.67□□□□□ -0.7
TRAF1-202ENST00000540010 TMEM150BA6NC51 233 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 USP2O75604 605 aaPredicted RBP10.67□□□□□ -0.7
TRAF1-202ENST00000540010 PHBP35232 272 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 OAZ1P54368 228 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 C6orf118Q5T5N4 469 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 SMC1BQ8NDV3 1235 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 SEPT9Q9UHD8 586 aaPredicted RBP10.67□□□□□ -0.7
TRAF1-202ENST00000540010 TRAF3IP3Q9Y228 551 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 SIK3Q9Y2K2 1263 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 NOC2LQ9Y3T9 749 aaKnown RBP10.67□□□□□ -0.7
TRAF1-202ENST00000540010 SMCHD1A6NHR9 2005 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 EPHB6O15197 1021 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 EIF3DO15371 548 aaKnown RBP eCLIP10.67□□□□□ -0.7
TRAF1-202ENST00000540010 CASP4P49662 377 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 NPEPPSP55786 919 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 MYO1EQ12965 1108 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 TAF11Q15544 211 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 CCDC14Q49A88 953 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 SWSAP1Q6NVH7 229 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 XRRA1Q6P2D8 792 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 HVCN1Q96D96 273 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 LBHD1Q9BQE6 289 aaPredicted RBP10.67□□□□□ -0.7
TRAF1-202ENST00000540010 PITPNM3Q9BZ71 974 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 A1CFQ9NQ94 594 aaKnown RBP10.67□□□□□ -0.7
TRAF1-202ENST00000540010 PSME4Q14997 1843 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 ARFGEF1Q9Y6D6 1849 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 RPTORQ8N122 1335 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 MEFVO15553 781 aaPredicted RBP10.67□□□□□ -0.7
TRAF1-202ENST00000540010 OPHN1O60890 802 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 AKAP3O75969 853 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 SASH3O75995 380 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 PSAPP07602 524 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 DRAP1Q14919 205 aaPredicted RBP10.67□□□□□ -0.7
TRAF1-202ENST00000540010 STXBP2Q15833 593 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 PHLDB3Q6NSJ2 640 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 PDXDC1Q6P996 788 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 WDR59Q6PJI9 974 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.67□□□□□ -0.7
TRAF1-202ENST00000540010 ZIM3Q96PE6 472 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 AZI2Q9H6S1 392 aa10.67□□□□□ -0.7
TRAF1-202ENST00000540010 TTC7AQ9ULT0 858 aaPredicted RBP10.67□□□□□ -0.7
TRAF1-202ENST00000540010 SPDYE16A6NNV3 312 aaPredicted RBP10.66□□□□□ -0.7
TRAF1-202ENST00000540010 SMIM24O75264 130 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 FOXR2Q6PJQ5 311 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 EEPD1Q7L9B9 569 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 ZNF720Q7Z2F6 126 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 PDCD7Q8N8D1 485 aaKnown RBP10.66□□□□□ -0.7
TRAF1-202ENST00000540010 GPRASP2Q96D09 838 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 ACCSQ96QU6 501 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 SLC24A3Q9HC58 644 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 JPH1Q9HDC5 661 aaPredicted RBP10.66□□□□□ -0.7
TRAF1-202ENST00000540010 PLAGL2Q9UPG8 496 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 AFG3L2Q9Y4W6 797 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 H7C0C1 242 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 EIF3HO15372 352 aaKnown RBP eCLIP10.66□□□□□ -0.7
TRAF1-202ENST00000540010 SLC16A4O15374 487 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 TTI1O43156 1089 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 RNF8O76064 485 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 SAT1P21673 171 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 ATP5OP48047 213 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 RARRES1P49788 294 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 ZNF394Q53GI3 561 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 VSIG10LQ86VR7 867 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 METTL13Q8N6R0 699 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 KCNV2Q8TDN2 545 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 C12orf42Q96LP6 360 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.66□□□□□ -0.7
TRAF1-202ENST00000540010 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.66□□□□□ -0.7
TRAF1-202ENST00000540010 LRRD1A4D1F6 860 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 INHBAP08476 426 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 KLRC1P26715 233 aa10.66□□□□□ -0.7
TRAF1-202ENST00000540010 PIK3CAP42336 1068 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms