RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CACNG4Q9UBN1 327 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 DAXXQ9UER7 740 aaPredicted RBP16.25■□□□□ 0.19
USP28-204ENST00000537642 STK39Q9UEW8 545 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 PRKAG3Q9UGI9 489 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 KCNG1Q9UIX4 513 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 ODF2LQ9ULJ1 636 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 HCFC2Q9Y5Z7 792 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 LILRB3O75022 631 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 SOD2P04179 222 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 SRGAP2BP0DMP2 458 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 MAPTP10636 758 aaKnown RBP16.24■□□□□ 0.19
USP28-204ENST00000537642 PROZP22891 400 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 NASPP49321 788 aaPredicted RBP16.24■□□□□ 0.19
USP28-204ENST00000537642 SMTNP53814 917 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 GIT2Q14161 759 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 NAB2Q15742 525 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 ZNF568Q3ZCX4 644 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 SYCE2Q6PIF2 218 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 APBB1IPQ7Z5R6 666 aaPredicted RBP16.24■□□□□ 0.19
USP28-204ENST00000537642 GJD3Q8N144 294 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 CEP120Q8N960 986 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 LARP4BQ92615 738 aaKnown RBP16.24■□□□□ 0.19
USP28-204ENST00000537642 RABGGTAQ92696 567 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 KHSRPQ92945 711 aaKnown RBP eCLIP16.24■□□□□ 0.19
USP28-204ENST00000537642 PAAF1Q9BRP4 392 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 HERC2P3Q9BVR0 1158 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 LARSQ9P2J5 1176 aaKnown RBP16.24■□□□□ 0.19
USP28-204ENST00000537642 USP15Q9Y4E8 981 aaPredicted RBP16.24■□□□□ 0.19
USP28-204ENST00000537642 CITO14578 2027 aa16.24■□□□□ 0.19
USP28-204ENST00000537642 C19orf67A6NJJ6 358 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 NR1I2O75469 434 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 THP07101 528 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 HSP90AA1P07900 732 aaKnown RBP16.23■□□□□ 0.19
USP28-204ENST00000537642 DDIT3P35638 169 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 GRM5P41594 1212 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 ZNF131P52739 623 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 NCKAP1LP55160 1127 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 STRN3Q13033 797 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 TUSC3Q13454 348 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 FOXD4L5Q5VV16 416 aaPredicted RBP16.23■□□□□ 0.19
USP28-204ENST00000537642 MPZL3Q6UWV2 235 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 ZBTB33Q86T24 672 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 ADHFE1Q8IWW8 467 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 KRI1Q8N9T8 703 aaKnown RBP16.23■□□□□ 0.19
USP28-204ENST00000537642 SPRYD3Q8NCJ5 442 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 LINC00301Q8NCQ3 95 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 SLC22A17Q8WUG5 538 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 FOXD4L4Q8WXT5 416 aaPredicted RBP16.23■□□□□ 0.19
USP28-204ENST00000537642 CASP10Q92851 521 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 KCNN1Q92952 543 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 ZBTB45Q96K62 511 aaPredicted RBP16.23■□□□□ 0.19
USP28-204ENST00000537642 S1PR5Q9H228 398 aa16.23■□□□□ 0.19
USP28-204ENST00000537642 CASTOR2A6NHX0 329 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 FAM13AO94988 1023 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 BRD1O95696 1058 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 KRT18P05783 430 aaKnown RBP16.22■□□□□ 0.19
USP28-204ENST00000537642 CNPP09543 421 aaKnown RBP16.22■□□□□ 0.19
USP28-204ENST00000537642 MCF2P10911 925 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 SSTR3P32745 418 aaPredicted RBP16.22■□□□□ 0.19
USP28-204ENST00000537642 HSP90AA2PQ14568 343 aaPredicted RBP16.22■□□□□ 0.19
USP28-204ENST00000537642 STK38Q15208 465 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 GLRA4Q5JXX5 417 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 FUT10Q6P4F1 479 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 HAUS6Q7Z4H7 955 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 MYCT1Q8N699 235 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 TMEM87AQ8NBN3 555 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 SUSD6Q92537 303 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 KLHL5Q96PQ7 755 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 GPR62Q9BZJ7 368 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 PARVGQ9HBI0 331 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 MRPL17Q9NRX2 175 aaKnown RBP16.22■□□□□ 0.19
USP28-204ENST00000537642 TFIP11Q9UBB9 837 aaKnown RBP16.22■□□□□ 0.19
USP28-204ENST00000537642 STK17AQ9UEE5 414 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 CCDC39Q9UFE4 941 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 ADAM28Q9UKQ2 775 aa16.22■□□□□ 0.19
USP28-204ENST00000537642 H0YCG3 227 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 C2CD2LO14523 706 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 TOM1L1O75674 476 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 URODP06132 367 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 ZSCAN22P10073 491 aaPredicted RBP16.21■□□□□ 0.19
USP28-204ENST00000537642 EPCAMP16422 314 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 HOXB8P17481 243 aaPredicted RBP16.21■□□□□ 0.19
USP28-204ENST00000537642 TXLNAP40222 546 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 OSTNP61366 133 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 PKP1Q13835 747 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 KIAA0319Q5VV43 1072 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 RRAGBQ5VZM2 374 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 ALKAL1Q6UXT8 129 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 ZPBP2Q6X784 338 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 B3GALT6Q96L58 329 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 ZNF396Q96N95 335 aaPredicted RBP16.21■□□□□ 0.19
USP28-204ENST00000537642 PPP1R10Q96QC0 940 aaKnown RBP16.21■□□□□ 0.19
USP28-204ENST00000537642 FIZ1Q96SL8 496 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 TCHPQ9BT92 498 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 CCDC94Q9BW85 323 aaPredicted RBP16.21■□□□□ 0.19
USP28-204ENST00000537642 APOL5Q9BWW9 433 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 EMILIN2Q9BXX0 1053 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 CHST7Q9NS84 486 aa16.21■□□□□ 0.19
USP28-204ENST00000537642 PLXNA3P51805 1871 aa16.2■□□□□ 0.18
USP28-204ENST00000537642 A0A087X0B3 334 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms