RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 EHHADHQ08426 723 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 HYAL1Q12794 435 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 ZNF568Q3ZCX4 644 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 PDE12Q6L8Q7 609 aaKnown RBP14.22□□□□□ -0.13
VPS28-216ENST00000533806 APBB1IPQ7Z5R6 666 aaPredicted RBP14.22□□□□□ -0.13
VPS28-216ENST00000533806 DDX53Q86TM3 631 aaKnown RBP14.22□□□□□ -0.13
VPS28-216ENST00000533806 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.22□□□□□ -0.13
VPS28-216ENST00000533806 RNF168Q8IYW5 571 aaPredicted RBP14.22□□□□□ -0.13
VPS28-216ENST00000533806 LRRC27Q9C0I9 530 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 GBP3Q9H0R5 595 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 ZHX3Q9H4I2 956 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 MAGEF1Q9HAY2 307 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 TLR9Q9NR96 1032 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 MARCH5Q9NX47 278 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 FAM13BQ9NYF5 915 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 PUF60Q9UHX1 559 aaKnown RBP14.22□□□□□ -0.13
VPS28-216ENST00000533806 PCDHGC5Q9Y5F6 944 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 STYXL1Q9Y6J8 313 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 MYO7AQ13402 2215 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 A0A0B4J269 797 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 A0A1B0GVL5 298 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 A0A1W2PQ27 194 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 A0A1W2PQ64 194 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 A0A1W2PQD8 194 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 SLFN14P0C7P3 912 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 PFKFB1P16118 471 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 CASP5P51878 434 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 KCNA1Q09470 495 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 GRIK3Q13003 919 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 TMEM132AQ24JP5 1023 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 ADGRD2Q7Z7M1 963 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 ZBTB33Q86T24 672 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 ATXN2LQ8WWM7 1075 aaKnown RBP14.21□□□□□ -0.13
VPS28-216ENST00000533806 HVCN1Q96D96 273 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 PPP1R10Q96QC0 940 aaKnown RBP14.21□□□□□ -0.13
VPS28-216ENST00000533806 PYM1Q9BRP8 204 aaKnown RBP14.21□□□□□ -0.13
VPS28-216ENST00000533806 FGFBP2Q9BYJ0 223 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 PANK4Q9NVE7 773 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 COG5Q9UP83 839 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 FAN1Q9Y2M0 1017 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 GDAQ9Y2T3 454 aa14.21□□□□□ -0.13
VPS28-216ENST00000533806 SMIM28A0A1B0GU29 152 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 ANKRD63C9JTQ0 380 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 F8W810 466 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 CLDN3O15551 220 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 THP07101 528 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 ADRB2P07550 413 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 IDEP14735 1019 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 GTF2F1P35269 517 aaKnown RBP eCLIP14.2□□□□□ -0.14
VPS28-216ENST00000533806 LTBRP36941 435 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 AMPD3Q01432 767 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 ADAM15Q13444 863 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 TUSC3Q13454 348 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 KCNC3Q14003 757 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 NOLC1Q14978 699 aaKnown RBP eCLIP14.2□□□□□ -0.14
VPS28-216ENST00000533806 HERC4Q5GLZ8 1057 aaPredicted RBP14.2□□□□□ -0.14
VPS28-216ENST00000533806 MRPL43Q8N983 215 aaKnown RBP14.2□□□□□ -0.14
VPS28-216ENST00000533806 HLA-CQ95604 372 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 PABPC5Q96DU9 382 aaKnown RBP14.2□□□□□ -0.14
VPS28-216ENST00000533806 TMEM169Q96HH4 297 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 TCF25Q9BQ70 676 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 TCHPQ9BT92 498 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 IKZF4Q9H2S9 585 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 MRPL44Q9H9J2 332 aaKnown RBP14.2□□□□□ -0.14
VPS28-216ENST00000533806 GDPD2Q9HCC8 539 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 NGRNQ9NPE2 291 aaKnown RBP14.2□□□□□ -0.14
VPS28-216ENST00000533806 CNTN3Q9P232 1028 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 THEGQ9P2T0 379 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 SERTAD1Q9UHV2 236 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 CIZ1Q9ULV3 898 aaPredicted RBP14.2□□□□□ -0.14
VPS28-216ENST00000533806 IRAK3Q9Y616 596 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 PLXNA4Q9HCM2 1894 aa14.2□□□□□ -0.14
VPS28-216ENST00000533806 HIDE1A8MVS5 230 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 HNRNPDLO14979 420 aaKnown RBP14.19□□□□□ -0.14
VPS28-216ENST00000533806 NCK2O43639 380 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 LILRB3O75022 631 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 MYBP10242 640 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 KCNE1P15382 129 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 CASP1P29466 404 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 ADSSP30520 456 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 NDUFA8P51970 172 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 TFF2Q03403 129 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 COASYQ13057 564 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 SLC10A6Q3KNW5 377 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 SEZ6Q53EL9 994 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 L1TD1Q5T7N2 865 aaKnown RBP14.19□□□□□ -0.14
VPS28-216ENST00000533806 EPM2AIP1Q7L775 607 aaPredicted RBP14.19□□□□□ -0.14
VPS28-216ENST00000533806 CCDC65Q8IXS2 484 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 VPS52Q8N1B4 723 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 GLIS3Q8NEA6 775 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 SNX27Q96L92 541 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 ZMAT2Q96NC0 199 aaKnown RBP14.19□□□□□ -0.14
VPS28-216ENST00000533806 ACAP3Q96P50 834 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 FAM193BQ96PV7 902 aaPredicted RBP14.19□□□□□ -0.14
VPS28-216ENST00000533806 PAAF1Q9BRP4 392 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 CCDC94Q9BW85 323 aaPredicted RBP14.19□□□□□ -0.14
VPS28-216ENST00000533806 ZBP1Q9H171 429 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 GOLPH3LQ9H4A5 285 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 UBE2ZQ9H832 354 aaPredicted RBP14.19□□□□□ -0.14
VPS28-216ENST00000533806 TBC1D7Q9P0N9 293 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms