RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 CHST7Q9NS84 486 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 SNTG2Q9NY99 539 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 KIF3AQ9Y496 699 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 WDFY4Q6ZS81 3184 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 THP07101 528 aa16.25■□□□□ 0.19
VPS28-215ENST00000531924 CENPBP07199 599 aaPredicted RBP16.25■□□□□ 0.19
VPS28-215ENST00000531924 FXR2P51116 673 aaKnown RBP eCLIP16.25■□□□□ 0.19
VPS28-215ENST00000531924 TDGQ13569 410 aa16.25■□□□□ 0.19
VPS28-215ENST00000531924 CEP57Q86XR8 500 aa16.25■□□□□ 0.19
VPS28-215ENST00000531924 GPR65Q8IYL9 337 aa16.25■□□□□ 0.19
VPS28-215ENST00000531924 RNF168Q8IYW5 571 aaPredicted RBP16.25■□□□□ 0.19
VPS28-215ENST00000531924 GSTCDQ8NEC7 633 aa16.25■□□□□ 0.19
VPS28-215ENST00000531924 HDAC7Q8WUI4 952 aa16.25■□□□□ 0.19
VPS28-215ENST00000531924 BSNDQ8WZ55 320 aa16.25■□□□□ 0.19
VPS28-215ENST00000531924 ATOH1Q92858 354 aaPredicted RBP16.25■□□□□ 0.19
VPS28-215ENST00000531924 BHMT2Q9H2M3 363 aa16.25■□□□□ 0.19
VPS28-215ENST00000531924 SMOC2Q9H3U7 446 aa16.25■□□□□ 0.19
VPS28-215ENST00000531924 FBXL21Q9UKT6 434 aa16.25■□□□□ 0.19
VPS28-215ENST00000531924 KIAA1024Q9UPX6 916 aa16.25■□□□□ 0.19
VPS28-215ENST00000531924 CASTOR2A6NHX0 329 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 RFPL2O75678 378 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 RECQL4O94761 1208 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 C1RP00736 705 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 NUBP1P53384 320 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 PDIA5Q14554 519 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 DCAF4L1Q3SXM0 396 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 FAM171A1Q5VUB5 890 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 KRT79Q5XKE5 535 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 SNX29Q8TEQ0 813 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 HASPINQ8TF76 798 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 WDR6Q9NNW5 1121 aaKnown RBP16.24■□□□□ 0.19
VPS28-215ENST00000531924 DDX19AQ9NUU7 478 aaKnown RBP16.24■□□□□ 0.19
VPS28-215ENST00000531924 FNIP2Q9P278 1114 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 DAXXQ9UER7 740 aaPredicted RBP16.24■□□□□ 0.19
VPS28-215ENST00000531924 DNM3Q9UQ16 869 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 GDAQ9Y2T3 454 aa16.24■□□□□ 0.19
VPS28-215ENST00000531924 ZNF318Q5VUA4 2279 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 CCDC169A6NNP5 214 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 K7ERI5 159 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 TGM5O43548 720 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 EFEMP2O95967 443 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 RFX1P22670 979 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 TCF15Q12870 199 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 ELAVL2Q12926 359 aaKnown RBP16.23■□□□□ 0.19
VPS28-215ENST00000531924 PTGDRQ13258 359 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 NBR1Q14596 966 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 LIN9Q5TKA1 542 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 MCTP1Q6DN14 999 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 PDXDC1Q6P996 788 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 FLCNQ8NFG4 579 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 FEZF2Q8TBJ5 459 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 TTPALQ9BTX7 342 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 KIFC3Q9BVG8 833 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 KCNK12Q9HB15 430 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 POLD4Q9HCU8 107 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 ZDHHC7Q9NXF8 308 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 IGSF9Q9P2J2 1179 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 USP20Q9Y2K6 914 aa16.23■□□□□ 0.19
VPS28-215ENST00000531924 CLUHO75153 1309 aa16.22■□□□□ 0.19
VPS28-215ENST00000531924 TTLL13PA6NNM8 815 aa16.22■□□□□ 0.19
VPS28-215ENST00000531924 STK25O00506 426 aa16.22■□□□□ 0.19
VPS28-215ENST00000531924 RPL17P18621 184 aaKnown RBP16.22■□□□□ 0.19
VPS28-215ENST00000531924 YARSP54577 528 aaKnown RBP16.22■□□□□ 0.19
VPS28-215ENST00000531924 ZRSR1Q15695 479 aaKnown RBP16.22■□□□□ 0.19
VPS28-215ENST00000531924 ATF7IP2Q5U623 682 aa16.22■□□□□ 0.19
VPS28-215ENST00000531924 ASTLQ6HA08 431 aaPredicted RBP16.22■□□□□ 0.19
VPS28-215ENST00000531924 PRSS55Q6UWB4 352 aaPredicted RBP16.22■□□□□ 0.19
VPS28-215ENST00000531924 DTHD1Q6ZMT9 781 aa16.22■□□□□ 0.19
VPS28-215ENST00000531924 RHOBTB2Q9BYZ6 727 aa16.22■□□□□ 0.19
VPS28-215ENST00000531924 CCDC113Q9H0I3 377 aa16.22■□□□□ 0.19
VPS28-215ENST00000531924 CACNG4Q9UBN1 327 aa16.22■□□□□ 0.19
VPS28-215ENST00000531924 ZDBF2Q9HCK1 2354 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 LAD1O00515 517 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 GALR2O43603 387 aaPredicted RBP16.21■□□□□ 0.19
VPS28-215ENST00000531924 ST18O60284 1047 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 KIF4AO95239 1232 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 U2AF2P26368 475 aaKnown RBP eCLIP16.21■□□□□ 0.19
VPS28-215ENST00000531924 CLCN5P51795 746 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 PEX3P56589 373 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 DMP1Q13316 513 aaPredicted RBP16.21■□□□□ 0.19
VPS28-215ENST00000531924 PSMD5Q16401 504 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 ECM1Q16610 540 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 RTP2Q5QGT7 225 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 EEF1DP3Q658K8 133 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 C4orf32Q8N8J7 132 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 DRC1Q96MC2 740 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 PAAF1Q9BRP4 392 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 TCHPQ9BT92 498 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 PRKD2Q9BZL6 878 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 NT5C3AQ9H0P0 336 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 FAM86C1Q9NVL1 165 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.21■□□□□ 0.192e-7■■■■□ 26
VPS28-215ENST00000531924 PCDHB6Q9Y5E3 794 aa16.21■□□□□ 0.19
VPS28-215ENST00000531924 PHLPP2Q6ZVD8 1323 aa16.2■□□□□ 0.18
VPS28-215ENST00000531924 H0Y858 1186 aa16.2■□□□□ 0.18
VPS28-215ENST00000531924 PTGESO14684 152 aa16.2■□□□□ 0.18
VPS28-215ENST00000531924 RABEP1Q15276 862 aa16.2■□□□□ 0.18
VPS28-215ENST00000531924 PPM1LQ5SGD2 360 aa16.2■□□□□ 0.18
VPS28-215ENST00000531924 GET4Q7L5D6 327 aaPredicted RBP16.2■□□□□ 0.18
VPS28-215ENST00000531924 TMEM105Q8N8V8 129 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms