RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 TUSC3Q13454 348 aa17.42■□□□□ 0.38
CPSF1-205ENST00000531042 TMEM132AQ24JP5 1023 aa17.42■□□□□ 0.38
CPSF1-205ENST00000531042 ELMSAN1Q6PJG2 1045 aa17.42■□□□□ 0.38
CPSF1-205ENST00000531042 OTOP3Q7RTS5 596 aa17.42■□□□□ 0.38
CPSF1-205ENST00000531042 IGSF22Q8N9C0 903 aa17.42■□□□□ 0.38
CPSF1-205ENST00000531042 ACSF2Q96CM8 615 aaPredicted RBP17.42■□□□□ 0.38
CPSF1-205ENST00000531042 PAAF1Q9BRP4 392 aa17.42■□□□□ 0.38
CPSF1-205ENST00000531042 BHMT2Q9H2M3 363 aa17.42■□□□□ 0.38
CPSF1-205ENST00000531042 SMOC2Q9H3U7 446 aa17.42■□□□□ 0.38
CPSF1-205ENST00000531042 POLD4Q9HCU8 107 aa17.42■□□□□ 0.38
CPSF1-205ENST00000531042 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.42■□□□□ 0.38
CPSF1-205ENST00000531042 SNTG2Q9NY99 539 aa17.42■□□□□ 0.38
CPSF1-205ENST00000531042 CACNG4Q9UBN1 327 aa17.42■□□□□ 0.38
CPSF1-205ENST00000531042 KIAA1024Q9UPX6 916 aa17.42■□□□□ 0.38
CPSF1-205ENST00000531042 PCDHB6Q9Y5E3 794 aa17.42■□□□□ 0.38
CPSF1-205ENST00000531042 CCDC195A0A1B0GUA6 201 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 TADA2AO75478 443 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 RECQL4O94761 1208 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 EFNA5P52803 228 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 PTPN5P54829 565 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 HSP90AA2PQ14568 343 aaPredicted RBP17.41■□□□□ 0.38
CPSF1-205ENST00000531042 EEF1DP3Q658K8 133 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 CYP26C1Q6V0L0 522 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 PALB2Q86YC2 1186 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 HDAC7Q8WUI4 952 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 RIN2Q8WYP3 895 aaPredicted RBP17.41■□□□□ 0.38
CPSF1-205ENST00000531042 KIFAP3Q92845 792 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 IFT74Q96LB3 600 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 ADPGKQ9BRR6 497 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 KIFC3Q9BVG8 833 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 RHOBTB2Q9BYZ6 727 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 DDX19AQ9NUU7 478 aaKnown RBP17.41■□□□□ 0.38
CPSF1-205ENST00000531042 FNIP2Q9P278 1114 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 STK24Q9Y6E0 443 aa17.41■□□□□ 0.38
CPSF1-205ENST00000531042 PAPLNO95428 1278 aa17.4■□□□□ 0.38
CPSF1-205ENST00000531042 THP07101 528 aa17.4■□□□□ 0.38
CPSF1-205ENST00000531042 SPATA31D3P0C874 917 aa17.4■□□□□ 0.38
CPSF1-205ENST00000531042 MYBP10242 640 aa17.4■□□□□ 0.38
CPSF1-205ENST00000531042 TCF15Q12870 199 aa17.4■□□□□ 0.38
CPSF1-205ENST00000531042 NAB2Q15742 525 aa17.4■□□□□ 0.38
CPSF1-205ENST00000531042 SPATA31D4Q6ZUB0 917 aa17.4■□□□□ 0.38
CPSF1-205ENST00000531042 SNX29Q8TEQ0 813 aa17.4■□□□□ 0.38
CPSF1-205ENST00000531042 RAB34Q9BZG1 259 aa17.4■□□□□ 0.38
CPSF1-205ENST00000531042 CXCL16Q9H2A7 254 aa17.4■□□□□ 0.38
CPSF1-205ENST00000531042 PLEKHA4Q9H4M7 779 aa17.4■□□□□ 0.38
CPSF1-205ENST00000531042 DAXXQ9UER7 740 aaPredicted RBP17.4■□□□□ 0.38
CPSF1-205ENST00000531042 SF3B1O75533 1304 aaKnown RBP eCLIP17.4■□□□□ 0.387e-7■■■■■ 85.3
CPSF1-205ENST00000531042 CASTOR2A6NHX0 329 aa17.39■□□□□ 0.37
CPSF1-205ENST00000531042 LAD1O00515 517 aa17.39■□□□□ 0.37
CPSF1-205ENST00000531042 TGM5O43548 720 aa17.39■□□□□ 0.37
CPSF1-205ENST00000531042 RFPL2O75678 378 aa17.39■□□□□ 0.37
CPSF1-205ENST00000531042 CENPBP07199 599 aaPredicted RBP17.39■□□□□ 0.37
CPSF1-205ENST00000531042 CREMQ03060 361 aa17.39■□□□□ 0.37
CPSF1-205ENST00000531042 DCAF4L1Q3SXM0 396 aa17.39■□□□□ 0.37
CPSF1-205ENST00000531042 RTP2Q5QGT7 225 aa17.39■□□□□ 0.37
CPSF1-205ENST00000531042 NT5DC1Q5TFE4 455 aa17.39■□□□□ 0.37
CPSF1-205ENST00000531042 LILRA6Q6PI73 481 aa17.39■□□□□ 0.37
CPSF1-205ENST00000531042 GLYCTKQ8IVS8 523 aa17.39■□□□□ 0.37
CPSF1-205ENST00000531042 HASPINQ8TF76 798 aa17.39■□□□□ 0.37
CPSF1-205ENST00000531042 ZNF707Q96C28 371 aaPredicted RBP17.39■□□□□ 0.37
CPSF1-205ENST00000531042 WDR6Q9NNW5 1121 aaKnown RBP17.39■□□□□ 0.37
CPSF1-205ENST00000531042 PP2D1A8MPX8 630 aa17.38■□□□□ 0.37
CPSF1-205ENST00000531042 E9PMD0 336 aa17.38■□□□□ 0.37
CPSF1-205ENST00000531042 N4BP1O75113 896 aaKnown RBP17.38■□□□□ 0.37
CPSF1-205ENST00000531042 KIF4AO95239 1232 aa17.38■□□□□ 0.37
CPSF1-205ENST00000531042 RPL17P18621 184 aaKnown RBP17.38■□□□□ 0.37
CPSF1-205ENST00000531042 PRPHP41219 470 aa17.38■□□□□ 0.37
CPSF1-205ENST00000531042 RABEP1Q15276 862 aa17.38■□□□□ 0.37
CPSF1-205ENST00000531042 IL17AQ16552 155 aa17.38■□□□□ 0.37
CPSF1-205ENST00000531042 ATF7IP2Q5U623 682 aa17.38■□□□□ 0.37
CPSF1-205ENST00000531042 PRSS55Q6UWB4 352 aaPredicted RBP17.38■□□□□ 0.37
CPSF1-205ENST00000531042 SMG7Q92540 1137 aaKnown RBP17.38■□□□□ 0.37
CPSF1-205ENST00000531042 PHOX2BQ99453 314 aa17.38■□□□□ 0.37
CPSF1-205ENST00000531042 NT5C3AQ9H0P0 336 aa17.38■□□□□ 0.37
CPSF1-205ENST00000531042 KCNK12Q9HB15 430 aa17.38■□□□□ 0.37
CPSF1-205ENST00000531042 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.38■□□□□ 0.37
CPSF1-205ENST00000531042 DNM3Q9UQ16 869 aa17.38■□□□□ 0.37
CPSF1-205ENST00000531042 GDAQ9Y2T3 454 aa17.38■□□□□ 0.37
CPSF1-205ENST00000531042 CLUHO75153 1309 aa17.38■□□□□ 0.37
CPSF1-205ENST00000531042 K7ERI5 159 aa17.37■□□□□ 0.37
CPSF1-205ENST00000531042 NUBP1P53384 320 aa17.37■□□□□ 0.37
CPSF1-205ENST00000531042 TDGQ13569 410 aa17.37■□□□□ 0.37
CPSF1-205ENST00000531042 FAM171A1Q5VUB5 890 aa17.37■□□□□ 0.37
CPSF1-205ENST00000531042 KRT79Q5XKE5 535 aa17.37■□□□□ 0.37
CPSF1-205ENST00000531042 DTHD1Q6ZMT9 781 aa17.37■□□□□ 0.37
CPSF1-205ENST00000531042 STAMQ92783 540 aa17.37■□□□□ 0.37
CPSF1-205ENST00000531042 TTPALQ9BTX7 342 aa17.37■□□□□ 0.37
CPSF1-205ENST00000531042 ZDHHC7Q9NXF8 308 aa17.37■□□□□ 0.37
CPSF1-205ENST00000531042 KIF3AQ9Y496 699 aa17.37■□□□□ 0.37
CPSF1-205ENST00000531042 CCDC169A6NNP5 214 aa17.36■□□□□ 0.37
CPSF1-205ENST00000531042 CDC25AP30304 524 aa17.36■□□□□ 0.37
CPSF1-205ENST00000531042 NPTX2P47972 431 aa17.36■□□□□ 0.37
CPSF1-205ENST00000531042 PEX3P56589 373 aa17.36■□□□□ 0.37
CPSF1-205ENST00000531042 CEP57Q86XR8 500 aa17.36■□□□□ 0.37
CPSF1-205ENST00000531042 DAW1Q8N136 415 aa17.36■□□□□ 0.37
CPSF1-205ENST00000531042 LNX1Q8TBB1 728 aaPredicted RBP17.36■□□□□ 0.37
CPSF1-205ENST00000531042 PIK3R5Q8WYR1 880 aa17.36■□□□□ 0.37
CPSF1-205ENST00000531042 CLSTN3Q9BQT9 956 aa17.36■□□□□ 0.37
CPSF1-205ENST00000531042 MMTAG2Q9BU76 263 aaKnown RBP17.36■□□□□ 0.37
CPSF1-205ENST00000531042 PRKD2Q9BZL6 878 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms