RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 CNTNAP2Q9UHC6 1331 aa17.34■□□□□ 0.37
NUP54-214ENST00000514307 COQ4Q9Y3A0 265 aa17.34■□□□□ 0.37
NUP54-214ENST00000514307 PTCH2Q9Y6C5 1203 aa17.34■□□□□ 0.37
NUP54-214ENST00000514307 DOCK3Q8IZD9 2030 aa17.33■□□□□ 0.37
NUP54-214ENST00000514307 LRRIQ3A6PVS8 624 aaPredicted RBP17.33■□□□□ 0.36
NUP54-214ENST00000514307 NOL4O94818 638 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 IPO7O95373 1038 aaKnown RBP17.33■□□□□ 0.36
NUP54-214ENST00000514307 HSPA8P11142 646 aaKnown RBP17.33■□□□□ 0.36
NUP54-214ENST00000514307 HARSP12081 509 aaKnown RBP17.33■□□□□ 0.36
NUP54-214ENST00000514307 CYLC1P35663 651 aaPredicted RBP17.33■□□□□ 0.36
NUP54-214ENST00000514307 ZNF200P98182 395 aaPredicted RBP17.33■□□□□ 0.36
NUP54-214ENST00000514307 ITGA7Q13683 1181 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 MEA1Q16626 185 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 AMHR2Q16671 573 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 DUOXA2Q1HG44 320 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 DCAF4L1Q3SXM0 396 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 CBWD6Q4V339 395 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 WDR44Q5JSH3 913 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 CBWD3Q5JTY5 395 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 CBWD5Q5RIA9 395 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 C1orf220Q5T0J3 134 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 LHX8Q68G74 356 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 PDXDC1Q6P996 788 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 TRIM65Q6PJ69 517 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 CD302Q8IX05 232 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 FBXL13Q8NEE6 735 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 ZSWIM2Q8NEG5 633 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 STK33Q9BYT3 514 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 HAPLN2Q9GZV7 340 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 TMEM117Q9H0C3 514 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 NLRC4Q9NPP4 1024 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 RAB20Q9NX57 234 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 CPSF3Q9UKF6 684 aaKnown RBP17.33■□□□□ 0.36
NUP54-214ENST00000514307 GINS2Q9Y248 185 aa17.33■□□□□ 0.36
NUP54-214ENST00000514307 GOLGA6L9A6NEM1 432 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 KBTBD13C9JR72 458 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 B4GALT5O43286 388 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 TSPAN1O60635 241 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 ZC3H11AO75152 810 aaKnown RBP eCLIP17.32■□□□□ 0.36
NUP54-214ENST00000514307 PHACTR2O75167 634 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 TUBB4AP04350 444 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 IQCF3P0C7M6 154 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 ARF4P18085 180 aaPredicted RBP17.32■□□□□ 0.36
NUP54-214ENST00000514307 STAT1P42224 750 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 KRT83P78385 493 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 PTGISQ16647 500 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 SLC9C1Q4G0N8 1177 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 SV2AQ7L0J3 742 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 SERINC5Q86VE9 423 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 TMEM139Q8IV31 216 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 BRSK2Q8IWQ3 736 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 THNSL1Q8IYQ7 743 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 BAP1Q92560 729 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 CCDC42Q96M95 316 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 PPP1R16BQ96T49 567 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 CGRRF1Q99675 332 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 GANQ9H2C0 597 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 PDE11AQ9HCR9 933 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 AIPL1Q9NZN9 384 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 APEX2Q9UBZ4 518 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 DNAJC12Q9UKB3 198 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 NOD1Q9Y239 953 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 EPN1Q9Y6I3 576 aaPredicted RBP17.32■□□□□ 0.36
NUP54-214ENST00000514307 MGAMO43451 1857 aa17.32■□□□□ 0.36
NUP54-214ENST00000514307 TTLL13PA6NNM8 815 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 ABLIM1O14639 778 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 SERPING1P05155 500 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 MFAP3P55082 362 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 MRPS6P82932 125 aaKnown RBP17.31■□□□□ 0.36
NUP54-214ENST00000514307 TMEM62Q0P6H9 643 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 PTK7Q13308 1070 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 HIC1Q14526 733 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 EPC2Q52LR7 807 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 SMYD5Q6GMV2 418 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 GDF6Q6KF10 455 aaPredicted RBP17.31■□□□□ 0.36
NUP54-214ENST00000514307 NOTUMQ6P988 496 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 WDR49Q8IV35 697 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 TXLNBQ8N3L3 684 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 PLEKHO2Q8TD55 490 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 ACAP3Q96P50 834 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 POP1Q99575 1024 aaKnown RBP17.31■□□□□ 0.36
NUP54-214ENST00000514307 CCDC94Q9BW85 323 aaPredicted RBP17.31■□□□□ 0.36
NUP54-214ENST00000514307 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.31■□□□□ 0.36
NUP54-214ENST00000514307 CDT1Q9H211 546 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 PDZD7Q9H5P4 517 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 ASB7Q9H672 318 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 TRPV2Q9Y5S1 764 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 MYH11P35749 1972 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 WDR81Q562E7 1941 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 ARID2Q68CP9 1835 aa17.31■□□□□ 0.36
NUP54-214ENST00000514307 LRRC53A6NM62 1247 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 B4GALT4O60513 344 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 CSDE1O75534 798 aaKnown RBP17.3■□□□□ 0.36
NUP54-214ENST00000514307 C4BPAP04003 597 aaKnown RBP17.3■□□□□ 0.36
NUP54-214ENST00000514307 EDN1P05305 212 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 CCDC175P0C221 793 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 STAG3L1P0CL83 205 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 ACTN1P12814 892 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 FERP16591 822 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 CTCFP49711 727 aaPredicted RBP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms