RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CALB2P22676 271 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 AKAP5P24588 427 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 CACNA2D1P54289 1103 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 RAB25P57735 213 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 ICA1Q05084 483 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 RIPPLY1Q0D2K3 151 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 C1DQ13901 141 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 C2CD6Q53TS8 623 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 RUNDC3AQ59EK9 446 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 AARS2Q5JTZ9 985 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 ZNF544Q6NX49 715 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 FGD2Q7Z6J4 655 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 DDIASQ8IXT1 998 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 RBBP8NLQ8NC74 664 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 ZNF564Q8TBZ8 553 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 TRPC4APQ8TEL6 797 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 UBE2OQ9C0C9 1292 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 MMADHCQ9H3L0 296 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 STAP1Q9ULZ2 295 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 SPATA2Q9UM82 520 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 PTPN23Q9H3S7 1636 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 EIF4E1BA6NMX2 242 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 TAF4O00268 1085 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 LCA5LO95447 670 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 PLOD1Q02809 727 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 TUBA3CQ13748 450 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 MAPRE1Q15691 268 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 USH1GQ495M9 461 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 FASTKD1Q53R41 847 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 TBC1D19Q8N5T2 526 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 BLMP54132 1417 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 STAT5AP42229 794 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 STAT5BP51692 787 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 COG2Q14746 738 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 TTC27Q6P3X3 843 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 BTN2A1Q7KYR7 527 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 LPCAT2Q7L5N7 544 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 GALNT4Q8N4A0 578 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 SPRTNQ9H040 489 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 CASS4Q9NQ75 786 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 C20orf96Q9NUD7 363 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 STOML2Q9UJZ1 356 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 ERBB4Q15303 1308 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 IFT140Q96RY7 1462 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 NOS1P29475 1434 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 SLCO1B7G3V0H7 640 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 TNPO2O14787 897 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 MFN2O95140 757 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 ATP1A3P13637 1013 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 OSBPP22059 807 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 SNX17Q15036 470 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 TIMM50Q3ZCQ8 353 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 PRMT9Q6P2P2 845 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 CYFIP1Q7L576 1253 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 DGCR14Q96DF8 476 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 SLC10A4Q96EP9 437 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 CCDC28BQ9BUN5 200 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 ISCUQ9H1K1 167 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 SYTL2Q9HCH5 934 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 NPHS2Q9NP85 383 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 LMCD1Q9NZU5 365 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 ABLIM1O14639 778 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 SNRPAP09012 282 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 TRIQKQ629K1 86 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 GLMNQ92990 594 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 EXT2Q93063 718 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 EFCAB1Q9HAE3 211 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 TRIM39Q9HCM9 518 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 AIPL1Q9NZN9 384 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 IPPQ9Y573 584 aa11.81□□□□□ -0.52
LIMCH1-217ENST00000512946 A0A0D9SFI3 127 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 PNMA6EA0A0J9YXQ4 647 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 PHF20L1A8MW92 1017 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 USP17L12C9JPN9 530 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 USP17L21D6R901 530 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 FGAP02671 866 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 ALOX5P09917 674 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 POU5F1BQ06416 359 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 PABPC4Q13310 644 aaKnown RBP eCLIP11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 WDR93Q6P2C0 686 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 FAM81AQ8TBF8 368 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 USE1Q9NZ43 259 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 SMIM31A0A1B0GVY4 71 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 AP3M2P53677 418 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 AP1S2P56377 157 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 PDAP1Q13442 181 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 CCDC157Q569K6 752 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 HABP4Q5JVS0 413 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 FAM83BQ5T0W9 1011 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 SDE2Q6IQ49 451 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 ZFP1Q6P2D0 407 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 APPL2Q8NEU8 664 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 IARS2Q9NSE4 1012 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 COMMD3-BMI1R4GMX3 469 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 STK36Q9NRP7 1315 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 SCTRP47872 440 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 BCAR1P56945 870 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 KCNK10P57789 538 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 PTPN12Q05209 780 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 BTKQ06187 659 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms