RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 SKOR1P84550 965 aa17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 CACNB2Q08289 660 aaPredicted RBP17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 SLC20A2Q08357 652 aa17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 XKR9Q5GH70 373 aa17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 XKR3Q5GH77 459 aa17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 C1orf186Q6ZWK4 172 aa17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 TLK2Q86UE8 772 aa17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 TRIM50Q86XT4 487 aa17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 SYCE1Q8N0S2 351 aa17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 EPB41L5Q9HCM4 733 aa17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 SEPT9Q9UHD8 586 aaPredicted RBP17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 ODF2LQ9ULJ1 636 aa17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 TRIM17Q9Y577 477 aa17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 EMSYQ7Z589 1322 aa17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 ZMYM2Q9UBW7 1377 aa17.35■□□□□ 0.37
SQSTM1-213ENST00000510187 HMGCRP04035 888 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 OATP04181 439 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 H2AFZP0C0S5 128 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 PRKAR2AP13861 404 aaKnown RBP17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 CNGA1P29973 690 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 STAT1P42224 750 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 ZNF131P52739 623 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 PRMT2P55345 433 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 GUCY2DQ02846 1103 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 TCERG1LQ5VWI1 586 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 PADI6Q6TGC4 694 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 H2AFVQ71UI9 128 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 PLPPR4Q7Z2D5 763 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 SLFN11Q7Z7L1 901 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 FAM186BQ8IYM0 893 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 TPCN2Q8NHX9 752 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 KRT12Q99456 494 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 SMARCAD1Q9H4L7 1026 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 PARVGQ9HBI0 331 aa17.34■□□□□ 0.37
SQSTM1-213ENST00000510187 MMP3P08254 477 aa17.33■□□□□ 0.37
SQSTM1-213ENST00000510187 MARK3P27448 753 aa17.33■□□□□ 0.37
SQSTM1-213ENST00000510187 CARSP49589 748 aaKnown RBP17.33■□□□□ 0.37
SQSTM1-213ENST00000510187 PPP2R5AQ15172 486 aa17.33■□□□□ 0.37
SQSTM1-213ENST00000510187 ENOX2Q16206 610 aaKnown RBP17.33■□□□□ 0.37
SQSTM1-213ENST00000510187 PXYLP1Q8TE99 480 aa17.33■□□□□ 0.37
SQSTM1-213ENST00000510187 ZBTB9Q96C00 473 aa17.33■□□□□ 0.37
SQSTM1-213ENST00000510187 CEP170P1Q96L14 293 aa17.33■□□□□ 0.37
SQSTM1-213ENST00000510187 SUCLA2Q9P2R7 463 aaPredicted RBP17.33■□□□□ 0.37
SQSTM1-213ENST00000510187 Q9Y3F1 56 aa17.33■□□□□ 0.37
SQSTM1-213ENST00000510187 NCANO14594 1321 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 BHMG1C9JSJ3 638 aaPredicted RBP17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 CCDC188H7C350 402 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 MYO1CO00159 1063 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 PGRMC1O00264 195 aaKnown RBP17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 KCNK3O14649 394 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 LGALS2P05162 132 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 RFX1P22670 979 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 CASP4P49662 377 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 SLC26A2P50443 739 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 CUL1Q13616 776 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 MYBPC2Q14324 1141 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 DGKDQ16760 1214 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 CFAP58Q5T655 872 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 IQCKQ8N0W5 287 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 FAM167AQ96KS9 214 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 ZIM3Q96PE6 472 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 CAPS2Q9BXY5 557 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 AP5M1Q9H0R1 490 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 NRBP2Q9NSY0 501 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 NFU1Q9UMS0 254 aa17.33■□□□□ 0.36
SQSTM1-213ENST00000510187 SEPT4O43236 478 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 CCDC172P0C7W6 258 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 ZNF286BP0CG31 522 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 HSPA9P38646 679 aaKnown RBP17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 NOP2P46087 812 aaKnown RBP17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 MRPS25P82663 173 aaKnown RBP17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 HS2ST1Q7LGA3 356 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 RASGEF1CQ8N431 466 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 MYCT1Q8N699 235 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 SLAIN1Q8ND83 568 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 CASKIN2Q8WXE0 1202 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.32■□□□□ 0.367e-11■■□□□ 13.1
SQSTM1-213ENST00000510187 STK33Q9BYT3 514 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 FAM107BQ9H098 131 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 ISCUQ9H1K1 167 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 CYP26B1Q9NR63 512 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 DMAC2Q9NW81 257 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 ERAP1Q9NZ08 941 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 FEZ2Q9UHY8 353 aaPredicted RBP17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 PACSIN2Q9UNF0 486 aaPredicted RBP17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 STXBP5LQ9Y2K9 1186 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 PCDHB13Q9Y5F0 798 aa17.32■□□□□ 0.36
SQSTM1-213ENST00000510187 WDR81Q562E7 1941 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 A6NJR5 290 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 DDX3XO00571 662 aaKnown RBP eCLIP17.31■□□□□ 0.363e-52■■■□□ 17.8
SQSTM1-213ENST00000510187 CLIC2O15247 247 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 RAD51CO43502 376 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 DUSP11O75319 330 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 HOXD8P13378 290 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 GUCY2CP25092 1073 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 CCND3P30281 292 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 SOX5P35711 763 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 CPT1AP50416 773 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 IRAK1P51617 712 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 MTERF2Q49AM1 385 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms