RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 FAM228BP0C875 321 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 CALB2P22676 271 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PAX7P23759 505 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 GP5P40197 560 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PIK3CAP42336 1068 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 DNA2P51530 1060 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ENPEPQ07075 957 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 WASHC5Q12768 1159 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 CBX3Q13185 183 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 NFYCQ13952 458 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 SQLEQ14534 574 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 COG2Q14746 738 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 EFTUD2Q15029 972 aaKnown RBP eCLIP3.77□□□□□ -1.81
USP53-205ENST00000509769 TXNRD1Q16881 649 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 MZT2AQ6P582 158 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 FAM199XQ6PEV8 388 aaPredicted RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 FBXO38Q6PIJ6 1188 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 UNC13DQ70J99 1090 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 TAS2R42Q7RTR8 314 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PLCZ1Q86YW0 608 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 CCDC71Q8IV32 467 aaPredicted RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 FAM178BQ8IXR5 827 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ZNF710Q8N1W2 664 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ZCCHC7Q8N3Z6 543 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 PCYOX1LQ8NBM8 494 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 SETD9Q8NE22 299 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PNPT1Q8TCS8 783 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 ZNF473Q8WTR7 871 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 SIRT1Q96EB6 747 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 CDHR1Q96JP9 859 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 C12orf66Q96MD2 445 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 STK33Q9BYT3 514 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 CDH19Q9H159 772 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 EML4Q9HC35 981 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 PCMTD2Q9NV79 361 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 CYTH4Q9UIA0 394 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 SLC13A4Q9UKG4 626 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PCDHA12Q9UN75 941 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 EPN1Q9Y6I3 576 aaPredicted RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 TOPAZ1Q8N9V7 1692 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 KDM3AQ9Y4C1 1321 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ST20-MTHFSA0A0A6YYL1 179 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 TRPC5OSA6NMA1 111 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 CENPBD1B2RD01 187 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 TCP11X1B4DZS4 312 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PSMD14O00487 310 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 CLTBP09497 229 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 H2AFZP0C0S5 128 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 P4HA1P13674 534 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 IDO1P14902 403 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 TCF3P15923 654 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PGM1P36871 562 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ADCY8P40145 1251 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 EIF2S3P41091 472 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 RAB4BP61018 213 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 HSF2Q03933 536 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PDE4BQ07343 736 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ARL13BQ3SXY8 428 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ARMC4Q5T2S8 1044 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ADALQ6DHV7 355 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 GALNT17Q6IS24 598 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 KIAA1841Q6NSI8 718 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 C4orf22Q6V702 233 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 RGS9BPQ6ZS82 235 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 H2AFVQ71UI9 128 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 GET4Q7L5D6 327 aaPredicted RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 AACSQ86V21 672 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 NME9Q86XW9 330 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 REM2Q8IYK8 340 aaPredicted RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 ZBTB8BQ8NAP8 495 aaPredicted RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 TMEM87AQ8NBN3 555 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 FNIP1Q8TF40 1166 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 EDC3Q96F86 508 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 FAR2Q96K12 515 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 UQCC2Q9BRT2 126 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 LRRC2Q9BYS8 371 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 UBXN6Q9BZV1 441 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 INTS2Q9H0H0 1204 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 C12orf4Q9NQ89 552 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 C15orf41Q9Y2V0 281 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 IQGAP3Q86VI3 1631 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ATP7BP35670 1465 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PIK3CDO00329 1044 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 EML1O00423 815 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 TRIM3O75382 744 aaPredicted RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 SEC31AO94979 1220 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 HEXIM1O94992 359 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 FAM58BPP0C7Q3 252 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PCSK2P16519 638 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PIK3R1P27986 724 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 GTF2H1P32780 548 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 RPL22P35268 128 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 MAGEA10P43363 369 aaPredicted RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 PSMD4P55036 377 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 NR1H2P55055 460 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 MFAP3P55082 362 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 MORF4L2Q15014 288 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 LRIF1Q5T3J3 769 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 EIF5AL1Q6IS14 154 aaKnown RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms