RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 BICD1Q96G01 975 aa11□□□□□ -0.65
NUP54-203ENST00000504173 CPB2Q96IY4 423 aa11□□□□□ -0.65
NUP54-203ENST00000504173 GSDMAQ96QA5 445 aa11□□□□□ -0.65
NUP54-203ENST00000504173 MRPL4Q9BYD3 311 aaKnown RBP11□□□□□ -0.65
NUP54-203ENST00000504173 FGFBP2Q9BYJ0 223 aa11□□□□□ -0.65
NUP54-203ENST00000504173 TMX1Q9H3N1 280 aa11□□□□□ -0.65
NUP54-203ENST00000504173 SLC39A2Q9NP94 309 aa11□□□□□ -0.65
NUP54-203ENST00000504173 CHST12Q9NRB3 414 aa11□□□□□ -0.65
NUP54-203ENST00000504173 TBX20Q9UMR3 447 aa11□□□□□ -0.65
NUP54-203ENST00000504173 PCDHB13Q9Y5F0 798 aa11□□□□□ -0.65
NUP54-203ENST00000504173 PCDHA5Q9Y5H7 936 aa11□□□□□ -0.65
NUP54-203ENST00000504173 CNTNAP2Q9UHC6 1331 aa11□□□□□ -0.65
NUP54-203ENST00000504173 H0Y858 1186 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 N4BP3O15049 544 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 EFCAB14O75071 495 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 PPP1R37O75864 691 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 BAIAP3O94812 1187 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 PRPF6O94906 941 aaKnown RBP10.99□□□□□ -0.65
NUP54-203ENST00000504173 EDN1P05305 212 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 ARF4P18085 180 aaPredicted RBP10.99□□□□□ -0.65
NUP54-203ENST00000504173 IBSPP21815 317 aaPredicted RBP10.99□□□□□ -0.65
NUP54-203ENST00000504173 HOXA11P31270 313 aaPredicted RBP10.99□□□□□ -0.65
NUP54-203ENST00000504173 KCNJ6P48051 423 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 DSC3Q14574 896 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 L1TD1Q5T7N2 865 aaKnown RBP10.99□□□□□ -0.65
NUP54-203ENST00000504173 NT5DC1Q5TFE4 455 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 TWF2Q6IBS0 349 aaKnown RBP10.99□□□□□ -0.65
NUP54-203ENST00000504173 NOTUMQ6P988 496 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 FAM43BQ6ZT52 329 aaPredicted RBP10.99□□□□□ -0.65
NUP54-203ENST00000504173 MAP4K3Q8IVH8 894 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 GLIS3Q8NEA6 775 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 LINC01599Q8WXQ3 324 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 KCNN1Q92952 543 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 CCDC51Q96ER9 411 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 ACCSQ96QU6 501 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 ADAM2Q99965 735 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 TARS2Q9BW92 718 aaKnown RBP10.99□□□□□ -0.65
NUP54-203ENST00000504173 TLR9Q9NR96 1032 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 EXOC7Q9UPT5 735 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 USP20Q9Y2K6 914 aa10.99□□□□□ -0.65
NUP54-203ENST00000504173 LCHNA4D1U4 455 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 TTLL13PA6NNM8 815 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 HNRNPDLO14979 420 aaKnown RBP10.98□□□□□ -0.65
NUP54-203ENST00000504173 EIF3DO15371 548 aaKnown RBP eCLIP10.98□□□□□ -0.65
NUP54-203ENST00000504173 MGEA5O60502 916 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 AMHP03971 560 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 SARSP49591 514 aaKnown RBP10.98□□□□□ -0.65
NUP54-203ENST00000504173 LIG4P49917 911 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 ZXDAP98168 799 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 STK4Q13043 487 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 NFKBIBQ15653 356 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 CCDC183Q5T5S1 534 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 ATF7IP2Q5U623 682 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 CDR2LQ86X02 465 aaPredicted RBP10.98□□□□□ -0.65
NUP54-203ENST00000504173 SYCP3Q8IZU3 236 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 ADSSL1Q8N142 457 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 KIAA0895Q8NCT3 520 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 SPATA20Q8TB22 786 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 SYAP1Q96A49 352 aaPredicted RBP10.98□□□□□ -0.65
NUP54-203ENST00000504173 RMDN1Q96DB5 314 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 MRPL38Q96DV4 380 aaKnown RBP10.98□□□□□ -0.65
NUP54-203ENST00000504173 TGS1Q96RS0 853 aaKnown RBP10.98□□□□□ -0.65
NUP54-203ENST00000504173 ACO2Q99798 780 aaKnown RBP10.98□□□□□ -0.65
NUP54-203ENST00000504173 ADPGKQ9BRR6 497 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 STRA6Q9BX79 667 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 TRIM6Q9C030 488 aaPredicted RBP10.98□□□□□ -0.65
NUP54-203ENST00000504173 PDZD7Q9H5P4 517 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 TMEM206Q9H813 350 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 RGS18Q9NS28 235 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 C1orf112Q9NSG2 853 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 KIAA1468Q9P260 1216 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 MAN1B1Q9UKM7 699 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 GDAQ9Y2T3 454 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 UBE4BO95155 1302 aa10.98□□□□□ -0.65
NUP54-203ENST00000504173 EP300Q09472 2414 aaPredicted RBP10.98□□□□□ -0.65
NUP54-203ENST00000504173 MAP1BP46821 2468 aaKnown RBP10.98□□□□□ -0.65
NUP54-203ENST00000504173 FASNP49327 2511 aaKnown RBP10.98□□□□□ -0.65
NUP54-203ENST00000504173 MICAL3Q7RTP6 2002 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 A0A1B0GUA9 196 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 BIN1O00499 593 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 ENPP3O14638 875 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 GALR2O43603 387 aaPredicted RBP10.97□□□□□ -0.65
NUP54-203ENST00000504173 KIF20AO95235 890 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 NPTXRO95502 500 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 PIGRP01833 764 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 MATR3P43243 847 aaKnown RBP eCLIP10.97□□□□□ -0.651e-9■■■■□ 19.8
NUP54-203ENST00000504173 RAB27AP51159 221 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 WDR5P61964 334 aaKnown RBP10.97□□□□□ -0.65
NUP54-203ENST00000504173 KCNA1Q09470 495 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 COL9A2Q14055 689 aaPredicted RBP10.97□□□□□ -0.65
NUP54-203ENST00000504173 KLHL40Q2TBA0 621 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 DCAF4L1Q3SXM0 396 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 ZNF568Q3ZCX4 644 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 TIGD5Q53EQ6 642 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 ZNF658Q5TYW1 1059 aaPredicted RBP10.97□□□□□ -0.65
NUP54-203ENST00000504173 EEF1DP3Q658K8 133 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 ISM2Q6H9L7 571 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 CAVIN1Q6NZI2 390 aaKnown RBP10.97□□□□□ -0.65
NUP54-203ENST00000504173 SLC27A1Q6PCB7 646 aa10.97□□□□□ -0.65
NUP54-203ENST00000504173 ZPBP2Q6X784 338 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 180.5 ms