RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 VN1R3Q9BXE9 311 aa13.18□□□□□ -0.3
MED28-203ENST00000503945 SMOC2Q9H3U7 446 aa13.18□□□□□ -0.3
MED28-203ENST00000503945 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.18□□□□□ -0.3
MED28-203ENST00000503945 RBM19Q9Y4C8 960 aaKnown RBP13.18□□□□□ -0.3
MED28-203ENST00000503945 ZFHX2Q9C0A1 2572 aaPredicted RBP13.17□□□□□ -0.3
MED28-203ENST00000503945 E9PMD0 336 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 GFRA3O60609 400 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 THP07101 528 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 ADH1AP07327 375 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 GRIK3Q13003 919 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 USP41Q3LFD5 358 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 KIAA0319Q5VV43 1072 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 KCTD17Q8N5Z5 321 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 FEZF2Q8TBJ5 459 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 IRF2BPLQ9H1B7 796 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 PDZD7Q9H5P4 517 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 SNTG2Q9NY99 539 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 LIMD1Q9UGP4 676 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 SORCS3Q9UPU3 1222 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 CACNA1HO95180 2353 aa13.17□□□□□ -0.3
MED28-203ENST00000503945 TTLL13PA6NNM8 815 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 PP2D1A8MPX8 630 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 GALR2O43603 387 aaPredicted RBP13.16□□□□□ -0.3
MED28-203ENST00000503945 GLUD2P49448 558 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 CLCN4P51793 760 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 PEX3P56589 373 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 DSG1Q02413 1049 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 TUSC3Q13454 348 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 MTMR3Q13615 1198 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 ATF7IP2Q5U623 682 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 ARL6IP4Q66PJ3 421 aaKnown RBP13.16□□□□□ -0.3
MED28-203ENST00000503945 RINT1Q6NUQ1 792 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 TMC5Q6UXY8 1006 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 UBALD2Q8IYN6 164 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 PLCD3Q8N3E9 789 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 TMEM105Q8N8V8 129 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 CDK5RAP3Q96JB5 506 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 DRC1Q96MC2 740 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 TCHPQ9BT92 498 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 HERC2P3Q9BVR0 1158 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 CCDC113Q9H0I3 377 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 NT5C3AQ9H0P0 336 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 TMEM134Q9H6X4 195 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 C17orf75Q9HAS0 396 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 RXFP1Q9HBX9 757 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 CHST7Q9NS84 486 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 MARCH5Q9NX47 278 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 ADAM28Q9UKQ2 775 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 USP20Q9Y2K6 914 aa13.16□□□□□ -0.3
MED28-203ENST00000503945 VWA3AA6NCI4 1184 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 TEX28O15482 410 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 HIP1RO75146 1068 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 CD2BP2O95400 341 aaKnown RBP13.15□□□□□ -0.3
MED28-203ENST00000503945 C1RP00736 705 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 ASGR2P07307 311 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 NPTX2P47972 431 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 NUBP1P53384 320 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 SMTNP53814 917 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 ATP2C1P98194 919 aaPredicted RBP13.15□□□□□ -0.3
MED28-203ENST00000503945 DMP1Q13316 513 aaPredicted RBP13.15□□□□□ -0.3
MED28-203ENST00000503945 HSP90AA2PQ14568 343 aaPredicted RBP13.15□□□□□ -0.3
MED28-203ENST00000503945 DCAF4L1Q3SXM0 396 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 NT5DC1Q5TFE4 455 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 C1orf186Q6ZWK4 172 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 GPR149Q86SP6 731 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 GPR65Q8IYL9 337 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 RABGGTAQ92696 567 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 ACSF2Q96CM8 615 aaPredicted RBP13.15□□□□□ -0.3
MED28-203ENST00000503945 SNX27Q96L92 541 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 TBC1D32Q96NH3 1257 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 NTPCRQ9BSD7 190 aaKnown RBP13.15□□□□□ -0.3
MED28-203ENST00000503945 KIFC3Q9BVG8 833 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 TIPINQ9BVW5 301 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 GPR62Q9BZJ7 368 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 SFXN1Q9H9B4 322 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 KMT5AQ9NQR1 393 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.15□□□□□ -0.3
MED28-203ENST00000503945 USTQ9Y2C2 406 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 GDAQ9Y2T3 454 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 ZMYM2Q9UBW7 1377 aa13.15□□□□□ -0.3
MED28-203ENST00000503945 PHLPP2Q6ZVD8 1323 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 CCDC195A0A1B0GUA6 201 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 SFI1A8K8P3 1242 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 EFEMP2O95967 443 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 GLUD1P00367 558 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 YARSP54577 528 aaKnown RBP13.14□□□□□ -0.31
MED28-203ENST00000503945 CREMQ03060 361 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 FUT10Q6P4F1 479 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 CYP26C1Q6V0L0 522 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 PALB2Q86YC2 1186 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 RNF168Q8IYW5 571 aaPredicted RBP13.14□□□□□ -0.31
MED28-203ENST00000503945 ZDHHC14Q8IZN3 488 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 HDAC7Q8WUI4 952 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 RIN2Q8WYP3 895 aaPredicted RBP13.14□□□□□ -0.31
MED28-203ENST00000503945 PLIN2Q99541 437 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 MMTAG2Q9BU76 263 aaKnown RBP13.14□□□□□ -0.31
MED28-203ENST00000503945 PLEKHA4Q9H4M7 779 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 TNFSF13BQ9Y275 285 aa13.14□□□□□ -0.31
MED28-203ENST00000503945 PTPRZ1P23471 2315 aaPredicted RBP13.14□□□□□ -0.31
MED28-203ENST00000503945 C2orf16Q68DN1 1984 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms