RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 PARM1Q6UWI2 310 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 PIK3AP1Q6ZUJ8 805 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 TPH2Q8IWU9 490 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 GPR65Q8IYL9 337 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 FGF14Q92915 247 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 HINFPQ9BQA5 517 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 PAAF1Q9BRP4 392 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 FBXW11Q9UKB1 542 aa16.34■□□□□ 0.21
TRAF4-212ENST00000498540 VWA8A3KMH1 1905 aa16.33■□□□□ 0.21
TRAF4-212ENST00000498540 FAM205CA6NFA0 338 aa16.33■□□□□ 0.2
TRAF4-212ENST00000498540 MARCH6O60337 910 aa16.33■□□□□ 0.2
TRAF4-212ENST00000498540 SLITRK3O94933 977 aa16.33■□□□□ 0.2
TRAF4-212ENST00000498540 GLRA2P23416 452 aa16.33■□□□□ 0.2
TRAF4-212ENST00000498540 FSHRP23945 695 aa16.33■□□□□ 0.2
TRAF4-212ENST00000498540 GPC5P78333 572 aa16.33■□□□□ 0.2
TRAF4-212ENST00000498540 CREMQ03060 361 aa16.33■□□□□ 0.2
TRAF4-212ENST00000498540 POU5F1BQ06416 359 aa16.33■□□□□ 0.2
TRAF4-212ENST00000498540 NCBP1Q09161 790 aaKnown RBP16.33■□□□□ 0.2
TRAF4-212ENST00000498540 CPLX2Q6PUV4 134 aaKnown RBP16.33■□□□□ 0.2
TRAF4-212ENST00000498540 DGLUCYQ7Z3D6 616 aa16.33■□□□□ 0.2
TRAF4-212ENST00000498540 GRASPQ7Z6J2 395 aaPredicted RBP16.33■□□□□ 0.2
TRAF4-212ENST00000498540 HACE1Q8IYU2 909 aa16.33■□□□□ 0.2
TRAF4-212ENST00000498540 MAML2Q8IZL2 1156 aaPredicted RBP16.33■□□□□ 0.2
TRAF4-212ENST00000498540 DCLK2Q8N568 766 aa16.33■□□□□ 0.2
TRAF4-212ENST00000498540 HASPINQ8TF76 798 aa16.33■□□□□ 0.2
TRAF4-212ENST00000498540 CYP46A1Q9Y6A2 500 aa16.33■□□□□ 0.2
TRAF4-212ENST00000498540 TADA2AO75478 443 aa16.32■□□□□ 0.2
TRAF4-212ENST00000498540 SF3B1O75533 1304 aaKnown RBP eCLIP16.32■□□□□ 0.23e-6■■■■□ 20.7
TRAF4-212ENST00000498540 REC8O95072 547 aa16.32■□□□□ 0.2
TRAF4-212ENST00000498540 ARL2P36404 184 aa16.32■□□□□ 0.2
TRAF4-212ENST00000498540 STARD6P59095 220 aa16.32■□□□□ 0.2
TRAF4-212ENST00000498540 HSP90AA2PQ14568 343 aaPredicted RBP16.32■□□□□ 0.2
TRAF4-212ENST00000498540 SLC27A1Q6PCB7 646 aa16.32■□□□□ 0.2
TRAF4-212ENST00000498540 RUBCNQ92622 972 aa16.32■□□□□ 0.2
TRAF4-212ENST00000498540 EIF2AK1Q9BQI3 630 aaKnown RBP16.32■□□□□ 0.2
TRAF4-212ENST00000498540 ZMYM2Q9UBW7 1377 aa16.32■□□□□ 0.2
TRAF4-212ENST00000498540 PARP2Q9UGN5 583 aa16.32■□□□□ 0.2
TRAF4-212ENST00000498540 CDH7Q9ULB5 785 aa16.32■□□□□ 0.2
TRAF4-212ENST00000498540 ZFP37Q9Y6Q3 630 aaPredicted RBP16.32■□□□□ 0.2
TRAF4-212ENST00000498540 GPR179Q6PRD1 2367 aa16.31■□□□□ 0.2
TRAF4-212ENST00000498540 NOTCH4Q99466 2003 aa16.31■□□□□ 0.2
TRAF4-212ENST00000498540 A0A1B0GUA9 196 aa16.31■□□□□ 0.2
TRAF4-212ENST00000498540 CASTOR2A6NHX0 329 aa16.31■□□□□ 0.2
TRAF4-212ENST00000498540 DGAT1O75907 488 aa16.31■□□□□ 0.2
TRAF4-212ENST00000498540 KIF4AO95239 1232 aa16.31■□□□□ 0.2
TRAF4-212ENST00000498540 SNW1Q13573 536 aaKnown RBP16.31■□□□□ 0.2
TRAF4-212ENST00000498540 SLFN12Q8IYM2 578 aa16.31■□□□□ 0.2
TRAF4-212ENST00000498540 SUMF1Q8NBK3 374 aa16.31■□□□□ 0.2
TRAF4-212ENST00000498540 NAP1L4Q99733 375 aaKnown RBP16.31■□□□□ 0.2
TRAF4-212ENST00000498540 CLSTN3Q9BQT9 956 aa16.31■□□□□ 0.2
TRAF4-212ENST00000498540 NFKBIZQ9BYH8 718 aa16.31■□□□□ 0.2
TRAF4-212ENST00000498540 POLR3FQ9H1D9 316 aaPredicted RBP16.31■□□□□ 0.2
TRAF4-212ENST00000498540 NCOR2Q9Y618 2525 aa16.31■□□□□ 0.2
TRAF4-212ENST00000498540 CCL16O15467 120 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 ADAM12O43184 909 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 LYPLA2O95372 231 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 C8AP07357 584 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 SCRN1Q12765 414 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 TUSC3Q13454 348 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 PUM1Q14671 1186 aaKnown RBP eCLIP16.3■□□□□ 0.2
TRAF4-212ENST00000498540 PSMD5Q16401 504 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 LIN9Q5TKA1 542 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 FAM171A1Q5VUB5 890 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 CEP57Q86XR8 500 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 LNX1Q8TBB1 728 aaPredicted RBP16.3■□□□□ 0.2
TRAF4-212ENST00000498540 PIK3R5Q8WYR1 880 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 FGF13Q92913 245 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 SHDQ96IW2 340 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 HSD17B14Q9BPX1 270 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 TTPALQ9BTX7 342 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 DDX23Q9BUQ8 820 aaKnown RBP16.3■□□□□ 0.2
TRAF4-212ENST00000498540 CXCL16Q9H2A7 254 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 ANKEF1Q9NU02 776 aa16.3■□□□□ 0.2
TRAF4-212ENST00000498540 MTF2Q9Y483 593 aaPredicted RBP16.3■□□□□ 0.2
TRAF4-212ENST00000498540 STK36Q9NRP7 1315 aa16.29■□□□□ 0.2
TRAF4-212ENST00000498540 A0A087WWV3 80 aa16.29■□□□□ 0.2
TRAF4-212ENST00000498540 KANSL1LA0AUZ9 987 aa16.29■□□□□ 0.2
TRAF4-212ENST00000498540 PTGESO14684 152 aa16.29■□□□□ 0.2
TRAF4-212ENST00000498540 BAG4O95429 457 aaKnown RBP16.29■□□□□ 0.2
TRAF4-212ENST00000498540 HNRNPA1P09651 372 aaKnown RBP eCLIP16.29■□□□□ 0.2
TRAF4-212ENST00000498540 RARRES1P49788 294 aa16.29■□□□□ 0.2
TRAF4-212ENST00000498540 NR5A1Q13285 461 aa16.29■□□□□ 0.2
TRAF4-212ENST00000498540 MLF2Q15773 248 aaPredicted RBP16.29■□□□□ 0.2
TRAF4-212ENST00000498540 PPM1LQ5SGD2 360 aa16.29■□□□□ 0.2
TRAF4-212ENST00000498540 ITFG1Q8TB96 612 aa16.29■□□□□ 0.2
TRAF4-212ENST00000498540 PIGOQ8TEQ8 1089 aa16.29■□□□□ 0.2
TRAF4-212ENST00000498540 KXD1Q9BQD3 176 aa16.29■□□□□ 0.2
TRAF4-212ENST00000498540 GPRC5CQ9NQ84 441 aa16.29■□□□□ 0.2
TRAF4-212ENST00000498540 SPATA6Q9NWH7 488 aaPredicted RBP16.29■□□□□ 0.2
TRAF4-212ENST00000498540 DLL3Q9NYJ7 618 aa16.29■□□□□ 0.2
TRAF4-212ENST00000498540 POLIQ9UNA4 740 aa16.29■□□□□ 0.2
TRAF4-212ENST00000498540 LRRIQ4A6NIV6 560 aa16.28■□□□□ 0.2
TRAF4-212ENST00000498540 TTLL13PA6NNM8 815 aa16.28■□□□□ 0.2
TRAF4-212ENST00000498540 USO1O60763 962 aaKnown RBP16.28■□□□□ 0.2
TRAF4-212ENST00000498540 KINO60870 393 aaKnown RBP16.28■□□□□ 0.2
TRAF4-212ENST00000498540 CDKL5O76039 1030 aa16.28■□□□□ 0.2
TRAF4-212ENST00000498540 XBP1P17861 261 aa16.28■□□□□ 0.2
TRAF4-212ENST00000498540 HOXA9P31269 272 aa16.28■□□□□ 0.2
TRAF4-212ENST00000498540 UBXN2BQ14CS0 331 aa16.28■□□□□ 0.2
TRAF4-212ENST00000498540 MTSS1LQ765P7 747 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms