RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 GOLGA8JA6NMD2 632 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 EIF3CLB5ME19 914 aaKnown RBP9.14□□□□□ -0.95
SF3A1-210ENST00000498259 ADCY6O43306 1168 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 XPOTO43592 962 aaKnown RBP9.14□□□□□ -0.95
SF3A1-210ENST00000498259 KRT86O43790 486 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 KIF5CO60282 957 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 NDUFA10O95299 355 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 TNNC2P02585 160 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 VTNP04004 478 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 TRIM49P0CI25 452 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 TRIM49CP0CI26 452 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 CAPN2P17655 700 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 PROZP22891 400 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 TBXAS1P24557 533 aaPredicted RBP9.14□□□□□ -0.95
SF3A1-210ENST00000498259 GRK4P32298 578 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 GCLMP48507 274 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 YARSP54577 528 aaKnown RBP9.14□□□□□ -0.95
SF3A1-210ENST00000498259 BPIFB4P59827 614 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 YWHAEP62258 255 aaKnown RBP9.14□□□□□ -0.95
SF3A1-210ENST00000498259 BEX3Q00994 111 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 KLHL30Q0D2K2 578 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 KIF5AQ12840 1032 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 BIRC3Q13489 604 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 TRPC3Q13507 836 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 RAPGEF1Q13905 1077 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 TDRD12Q587J7 1177 aaKnown RBP9.14□□□□□ -0.95
SF3A1-210ENST00000498259 SLC39A4Q6P5W5 647 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 PDXDC1Q6P996 788 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 CATSPER4Q7RTX7 472 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 KIAA1328Q86T90 577 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 BRSK2Q8IWQ3 736 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 TTC39CQ8N584 583 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 USP38Q8NB14 1042 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 TRPV1Q8NER1 839 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 DHX38Q92620 1227 aaKnown RBP9.14□□□□□ -0.95
SF3A1-210ENST00000498259 TAF4BQ92750 862 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 ANKRD36BP1Q96IX9 119 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 EIF3CQ99613 913 aaKnown RBP9.14□□□□□ -0.95
SF3A1-210ENST00000498259 CCDC94Q9BW85 323 aaPredicted RBP9.14□□□□□ -0.95
SF3A1-210ENST00000498259 INTS2Q9H0H0 1204 aaKnown RBP9.14□□□□□ -0.95
SF3A1-210ENST00000498259 FAM49AQ9H0Q0 323 aaPredicted RBP9.14□□□□□ -0.95
SF3A1-210ENST00000498259 NHEJ1Q9H9Q4 299 aaPredicted RBP9.14□□□□□ -0.95
SF3A1-210ENST00000498259 PLEKHA5Q9HAU0 1116 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 NLRC4Q9NPP4 1024 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 GTF2IRD1Q9UHL9 959 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 PPP2R2CQ9Y2T4 447 aa9.14□□□□□ -0.95
SF3A1-210ENST00000498259 MGAMO43451 1857 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 LRRIQ3A6PVS8 624 aaPredicted RBP9.13□□□□□ -0.95
SF3A1-210ENST00000498259 KBTBD13C9JR72 458 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 GPR182O15218 404 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 B4GALT4O60513 344 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 ADAMTS4O75173 837 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 PGK1P00558 417 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 ASGR1P07306 291 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 TMEM191BP0C7N4 346 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 HARSP12081 509 aaKnown RBP9.13□□□□□ -0.95
SF3A1-210ENST00000498259 P4HA1P13674 534 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 DARSP14868 501 aaKnown RBP9.13□□□□□ -0.95
SF3A1-210ENST00000498259 ELNP15502 786 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 SLC9A1P19634 815 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 HOXC8P31273 242 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 ACOT2P49753 483 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 KLK7P49862 253 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 ADAM17P78536 824 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 GCNT1Q02742 428 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 KCNA10Q16322 511 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 PTPN21Q16825 1174 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 SGSM1Q2NKQ1 1148 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 ZACNQ401N2 412 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 CBWD6Q4V339 395 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 FAM47CQ5HY64 1035 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 CBWD3Q5JTY5 395 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 CBWD5Q5RIA9 395 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 PPP1R2P3Q6NXS1 205 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 SLC27A1Q6PCB7 646 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 ZNF662Q6ZS27 426 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 SV2AQ7L0J3 742 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 ZBTB33Q86T24 672 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 TMEM139Q8IV31 216 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 KLHDC9Q8NEP7 349 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 KIF18AQ8NI77 898 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 ZNF296Q8WUU4 475 aaPredicted RBP9.13□□□□□ -0.95
SF3A1-210ENST00000498259 UBE2Q2Q8WVN8 375 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 BAP1Q92560 729 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 CALR3Q96L12 384 aaKnown RBP9.13□□□□□ -0.95
SF3A1-210ENST00000498259 ACAP3Q96P50 834 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 CGRRF1Q99675 332 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 TMEM117Q9H0C3 514 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 GANQ9H2C0 597 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 FAM124BQ9H5Z6 455 aaPredicted RBP9.13□□□□□ -0.95
SF3A1-210ENST00000498259 HAUS4Q9H6D7 363 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 PTPRHQ9HD43 1115 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 UBE2TQ9NPD8 197 aaPredicted RBP9.13□□□□□ -0.95
SF3A1-210ENST00000498259 CHST12Q9NRB3 414 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 HDAC6Q9UBN7 1215 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 DNAJC12Q9UKB3 198 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 CPSF3Q9UKF6 684 aaKnown RBP9.13□□□□□ -0.95
SF3A1-210ENST00000498259 GINS2Q9Y248 185 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 DERAQ9Y315 318 aa9.13□□□□□ -0.95
SF3A1-210ENST00000498259 TRIM17Q9Y577 477 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms