RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 FAM212AQ96EL1 285 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 DHTKD1Q96HY7 919 aaPredicted RBP12.98□□□□□ -0.33
CUX1-210ENST00000497815 TSG101Q99816 390 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 FAM213AQ9BRX8 229 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 GZF1Q9H116 711 aaPredicted RBP12.98□□□□□ -0.33
CUX1-210ENST00000497815 RSAD1Q9HA92 442 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 HSPBP1Q9NZL4 362 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 MICAL3Q7RTP6 2002 aa12.98□□□□□ -0.33
CUX1-210ENST00000497815 TBKBP1A7MCY6 615 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 FAM189A1O60320 539 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 EXOC3O60645 756 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 LETM1O95202 739 aaPredicted RBP12.97□□□□□ -0.33
CUX1-210ENST00000497815 CXCL8P10145 99 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 CCNE1P24864 410 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 PPP1R2P41236 205 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 YARSP54577 528 aaKnown RBP12.97□□□□□ -0.33
CUX1-210ENST00000497815 SNRPFP62306 86 aaKnown RBP12.97□□□□□ -0.33
CUX1-210ENST00000497815 TYRO3Q06418 890 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 PAK1Q13153 545 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 STX1AQ16623 288 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 ZSCAN23Q3MJ62 389 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 PRPF38BQ5VTL8 546 aaKnown RBP12.97□□□□□ -0.33
CUX1-210ENST00000497815 CENPPQ6IPU0 288 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 GLB1LQ6UWU2 654 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 CRIPAKQ8N1N5 446 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 GPD1LQ8N335 351 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 RDH13Q8NBN7 331 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 PHOSPHO2Q8TCD6 241 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 EEF2KMTQ96G04 330 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 ZFP42Q96MM3 310 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 ACAP3Q96P50 834 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 YME1L1Q96TA2 773 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 GAD1Q99259 594 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 PRO3102Q9H379 93 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 CGNQ9P2M7 1197 aaKnown RBP12.97□□□□□ -0.33
CUX1-210ENST00000497815 TRAF3IP3Q9Y228 551 aa12.97□□□□□ -0.33
CUX1-210ENST00000497815 ARL5CA6NH57 179 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 HOXA2O43364 376 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 TLL1O43897 1013 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 EXTL3O43909 919 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 OFD1O75665 1012 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 DGKIO75912 1065 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 GJB5O95377 273 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 POMCP01189 267 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 CLTAP09496 248 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 NR2F2P24468 414 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 AFF1P51825 1210 aaKnown RBP12.96□□□□□ -0.33
CUX1-210ENST00000497815 ENOX2Q16206 610 aaKnown RBP12.96□□□□□ -0.33
CUX1-210ENST00000497815 ZCWPW2Q504Y3 356 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 CEP135Q66GS9 1140 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 CRELD2Q6UXH1 353 aaPredicted RBP12.96□□□□□ -0.33
CUX1-210ENST00000497815 CBWD2Q8IUF1 395 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 XXYLT1Q8NBI6 393 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 RPS6KC1Q96S38 1066 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 CXCL16Q9H2A7 254 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 RPF1Q9H9Y2 349 aaKnown RBP12.96□□□□□ -0.33
CUX1-210ENST00000497815 UBN1Q9NPG3 1134 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 ANO10Q9NW15 660 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 DACH1Q9UI36 760 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 CPSF3Q9UKF6 684 aaKnown RBP12.96□□□□□ -0.33
CUX1-210ENST00000497815 GIT1Q9Y2X7 761 aa12.96□□□□□ -0.33
CUX1-210ENST00000497815 BICDL2A1A5D9 508 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 MEFVO15553 781 aaPredicted RBP12.95□□□□□ -0.34
CUX1-210ENST00000497815 LDHAP00338 332 aaKnown RBP12.95□□□□□ -0.34
CUX1-210ENST00000497815 MYOGP15173 224 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 RPL13P26373 211 aaKnown RBP12.95□□□□□ -0.34
CUX1-210ENST00000497815 PBX2P40425 430 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 CASP4P49662 377 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 SCNN1GP51170 649 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 LRRC63Q05C16 580 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 SPAG1Q07617 926 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 ADAM9Q13443 819 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 BTG3Q14201 252 aaPredicted RBP12.95□□□□□ -0.34
CUX1-210ENST00000497815 SNRNP35Q16560 246 aaKnown RBP12.95□□□□□ -0.34
CUX1-210ENST00000497815 KYAT1Q16773 422 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 SLC10A6Q3KNW5 377 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 NOMO2Q5JPE7 1267 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 GLRA4Q5JXX5 417 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 C11orf57Q6ZUT1 292 aaPredicted RBP12.95□□□□□ -0.34
CUX1-210ENST00000497815 C12orf56Q8IXR9 622 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 URGCPQ8TCY9 931 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 SNX27Q96L92 541 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 CASD1Q96PB1 797 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 RAD9AQ99638 391 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 TMEM117Q9H0C3 514 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 DNAJC25Q9H1X3 360 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 TOPORSQ9NS56 1045 aaPredicted RBP12.95□□□□□ -0.34
CUX1-210ENST00000497815 RBAKQ9NYW8 714 aaPredicted RBP12.95□□□□□ -0.34
CUX1-210ENST00000497815 HCSTQ9UBK5 93 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 RWDD2AQ9UIY3 292 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 INSL6Q9Y581 213 aa12.95□□□□□ -0.34
CUX1-210ENST00000497815 PTPRSQ13332 1948 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.94□□□□□ -0.34
CUX1-210ENST00000497815 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.94□□□□□ -0.34
CUX1-210ENST00000497815 LCHNA4D1U4 455 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 ZNF233A6NK53 670 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 LACTBL1A8MY62 500 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 KIAA0391O15091 583 aaKnown RBP12.94□□□□□ -0.34
CUX1-210ENST00000497815 ADRB2P07550 413 aa12.94□□□□□ -0.34
CUX1-210ENST00000497815 CCDC192P0DO97 292 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms