RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 DR1Q01658 176 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 POU5F1Q01860 360 aaKnown RBP11.9□□□□□ -0.5
CMSS1-208ENST00000496116 DHX34Q14147 1143 aaKnown RBP11.9□□□□□ -0.5
CMSS1-208ENST00000496116 EMC2Q15006 297 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 DDX42Q86XP3 938 aaKnown RBP eCLIP11.9□□□□□ -0.5
CMSS1-208ENST00000496116 ZNF564Q8TBZ8 553 aaPredicted RBP11.9□□□□□ -0.5
CMSS1-208ENST00000496116 PIK3R5Q8WYR1 880 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 ALG3Q92685 438 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 FNBP1Q96RU3 617 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 FAM213AQ9BRX8 229 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 ZNF302Q9NR11 478 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 C1orf112Q9NSG2 853 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.9□□□□□ -0.5
CMSS1-208ENST00000496116 GGA3Q9NZ52 723 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 RASAL2Q9UJF2 1139 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 PLAAQ9Y263 795 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 AFG3L2Q9Y4W6 797 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 FAM170AA1A519 330 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 FAM187AA6NFU0 413 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 TMEM110-MUSTN1A8MSY1 372 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 HMGB1P1B2RPK0 211 aaPredicted RBP11.9□□□□□ -0.5
CMSS1-208ENST00000496116 DAPK3O43293 454 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 PPFIA4O75335 1185 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 ERLIN2O94905 339 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 GGPS1O95749 300 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 CYP1A2P05177 515 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 COMTP21964 271 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 ICAM3P32942 547 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 HSD17B3P37058 310 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 SKOR1P84550 965 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 ZNF211Q13398 564 aaPredicted RBP11.9□□□□□ -0.5
CMSS1-208ENST00000496116 MESDQ14696 234 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 SH3D19Q5HYK7 790 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 WDR44Q5JSH3 913 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 NAA35Q5VZE5 725 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 ANKRD35Q8N283 1001 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 ZNF653Q96CK0 615 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 NUP85Q9BW27 656 aa11.9□□□□□ -0.5
CMSS1-208ENST00000496116 CELF4Q9BZC1 486 aaKnown RBP11.9□□□□□ -0.5
CMSS1-208ENST00000496116 TOPORSQ9NS56 1045 aaPredicted RBP11.9□□□□□ -0.5
CMSS1-208ENST00000496116 MAFBQ9Y5Q3 323 aaPredicted RBP11.9□□□□□ -0.5
CMSS1-208ENST00000496116 SPOPO43791 374 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 OATP04181 439 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 KRT5P13647 590 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 CHRNA3P32297 505 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 CTNNA1P35221 906 aaKnown RBP11.89□□□□□ -0.51
CMSS1-208ENST00000496116 CEP85LQ5SZL2 805 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 SLFN12LQ6IEE8 588 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 ACAD10Q6JQN1 1059 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 CYFIP1Q7L576 1253 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 TAS1R3Q7RTX0 852 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 TRPM4Q8TD43 1214 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 SLC7A3Q8WY07 619 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 KCNN1Q92952 543 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 ATP6V1G3Q96LB4 118 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 PLVAPQ9BX97 442 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 GPRC5DQ9NZD1 345 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 FBXO40Q9UH90 709 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 TRPC6Q9Y210 931 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 LOC285556D6RIA3 1793 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 SORBS3O60504 671 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 PHF2O75151 1096 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 ATG7O95352 703 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 LDHAP00338 332 aaKnown RBP11.89□□□□□ -0.51
CMSS1-208ENST00000496116 MYZAPP0CAP1 466 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 TNNI1P19237 187 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 NAMPTP43490 491 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 IRAK1P51617 712 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 PSMD6Q15008 389 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 KCTD16Q68DU8 428 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 ADAT2Q7Z6V5 191 aaKnown RBP11.89□□□□□ -0.51
CMSS1-208ENST00000496116 ZNF677Q86XU0 584 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 PROCA1Q8NCQ7 364 aaPredicted RBP11.89□□□□□ -0.51
CMSS1-208ENST00000496116 DEPTORQ8TB45 409 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 ERP44Q9BS26 406 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 PORCNQ9H237 461 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 NEUROG2Q9H2A3 272 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 ACP6Q9NPH0 428 aa11.89□□□□□ -0.51
CMSS1-208ENST00000496116 ATMINO43313 823 aaPredicted RBP11.88□□□□□ -0.51
CMSS1-208ENST00000496116 CTNNA2P26232 953 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 GBP1P32455 592 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 BPIFB4P59827 614 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 GNGT1P63211 74 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 CLDN10P78369 228 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 SP2Q02086 613 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 SPDYCQ5MJ68 293 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 KDM7AQ6ZMT4 941 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 RUFY4Q6ZNE9 571 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 C15orf39Q6ZRI6 1047 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.88□□□□□ -0.51
CMSS1-208ENST00000496116 UBLCP1Q8WVY7 318 aaPredicted RBP11.88□□□□□ -0.51
CMSS1-208ENST00000496116 PSPC1Q8WXF1 523 aaKnown RBP11.88□□□□□ -0.51
CMSS1-208ENST00000496116 DDX1Q92499 740 aaKnown RBP11.88□□□□□ -0.51
CMSS1-208ENST00000496116 KRT35Q92764 455 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 TATDN2Q93075 761 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 RUNDC3BQ96NL0 473 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 FMO2Q99518 471 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 DPH5Q9H2P9 285 aa11.88□□□□□ -0.51
CMSS1-208ENST00000496116 DHX33Q9H6R0 707 aaKnown RBP11.88□□□□□ -0.51
CMSS1-208ENST00000496116 AGO2Q9UKV8 859 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms