RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PPM1FP49593 454 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 CYP2W1Q8TAV3 490 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 ANKS1AQ92625 1134 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 HEXIM2Q96MH2 286 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 HSPBP1Q9NZL4 362 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 SYNGAP1Q96PV0 1343 aa17.35■□□□□ 0.37
CCDC88B-209ENST00000494080 AGTP01019 485 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 FAM153BP0C7A2 387 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 FAM153CQ494X1 144 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 APOBEC3HQ6NTF7 200 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 ERICH1Q86X53 443 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 CEP120Q8N960 986 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 FBXL13Q8NEE6 735 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 CAVIN3Q969G5 261 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 STAMBPL1Q96FJ0 436 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 TAAR1Q96RJ0 339 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 ERGIC2Q96RQ1 377 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 NUDT12Q9BQG2 462 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 RUSC1Q9BVN2 902 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 MIS12Q9H081 205 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 SEMA6BQ9H3T3 888 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 TMBIM4Q9HC24 238 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 FAM153AQ9UHL3 310 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 PRLRP16471 622 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 CAP2P40123 477 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 ACOT2P49753 483 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 ZNF667Q5HYK9 610 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 NME8Q8N427 588 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 CFAP57Q96MR6 1250 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 ELP3Q9H9T3 547 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 MAD1L1Q9Y6D9 718 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 FAM187AA6NFU0 413 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 FUKQ8N0W3 1084 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 RBAKQ9NYW8 714 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 SEPT10Q9P0V9 454 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 ZFP69BQ9UJL9 534 aa17.34■□□□□ 0.37
CCDC88B-209ENST00000494080 PITPNM2Q9BZ72 1349 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 PPFIA2O75334 1257 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 HSPA9P38646 679 aaKnown RBP17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 ERFP50548 548 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 RHBDL3P58872 404 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 GJB7Q6PEY0 223 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 EXOC8Q8IYI6 725 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 SYT2Q8N9I0 419 aaPredicted RBP17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 KIAA1586Q9HCI6 787 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 AGO2Q9UKV8 859 aaKnown RBP17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 CDR2Q01850 454 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 KIAA1755Q5JYT7 1200 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 RINT1Q6NUQ1 792 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 MAP7D3Q8IWC1 876 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 MIEF2Q96C03 454 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 RPS6KC1Q96S38 1066 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 NUP85Q9BW27 656 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 AP5M1Q9H0R1 490 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 SUDS3Q9H7L9 328 aaPredicted RBP17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 ANGPTL2Q9UKU9 493 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 DIS3Q9Y2L1 958 aaKnown RBP17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 L3MBTL1Q9Y468 752 aa17.33■□□□□ 0.37
CCDC88B-209ENST00000494080 KNDC1Q76NI1 1749 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 FOXP2O15409 715 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 ARP10275 920 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 YWHAGP61981 247 aaKnown RBP eCLIP17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 TMED1Q13445 227 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 NAB2Q15742 525 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 CDO1Q16878 200 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 HSP90AA5PQ58FG0 334 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 CCDC137Q6PK04 289 aaKnown RBP17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 ZNF564Q8TBZ8 553 aaPredicted RBP17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 FAM163AQ96GL9 167 aaPredicted RBP17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 CENPKQ9BS16 269 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 A0A1W2PQJ5 194 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 MIF4GDA9UHW6 222 aaKnown RBP17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 GALCP54803 685 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 SKOR1P84550 965 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 TTMPQ5BVD1 217 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 ANKRD20A8PQ5CZ79 823 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 CATSPER4Q7RTX7 472 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 ST13P4Q8IZP2 240 aaPredicted RBP17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 NACA2Q9H009 215 aa17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.33■□□□□ 0.36
CCDC88B-209ENST00000494080 HOXA10P31260 410 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 NFX1Q12986 1120 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 ZWILCHQ9H900 591 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 AKAP12Q02952 1782 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 CHRNA3P32297 505 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 TMEM154Q6P9G4 183 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 RFFLQ8WZ73 363 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 RIT2Q99578 217 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 KIFC3Q9BVG8 833 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 Q9H521 79 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 SLIT3O75094 1523 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 MRC1P22897 1456 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 STAT5BP51692 787 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 CXCL9Q07325 125 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 NT5DC1Q5TFE4 455 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 RNF25Q96BH1 459 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 FAM167AQ96KS9 214 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 SPATA33Q96N06 139 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 NGRNQ9NPE2 291 aaKnown RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms