RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 TDRD15B5MCY1 1934 aaKnown RBP17.17■□□□□ 0.34
HPS4-216ENST00000493455 RALGAPA2Q2PPJ7 1873 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 TNRC18O15417 2968 aaPredicted RBP17.16■□□□□ 0.34
HPS4-216ENST00000493455 RECQL4O94761 1208 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 ATF7P17544 494 aaPredicted RBP17.16■□□□□ 0.34
HPS4-216ENST00000493455 RPL13P26373 211 aaKnown RBP17.16■□□□□ 0.34
HPS4-216ENST00000493455 GRM5P41594 1212 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 CASP4P49662 377 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 GATMP50440 423 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 SNRPFP62306 86 aaKnown RBP17.16■□□□□ 0.34
HPS4-216ENST00000493455 LRRC63Q05C16 580 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 PAN2Q504Q3 1202 aaKnown RBP17.16■□□□□ 0.34
HPS4-216ENST00000493455 ZCWPW2Q504Y3 356 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 HSP90AA4PQ58FG1 418 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 TTI2Q6NXR4 508 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 CHRDL2Q6WN34 429 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 CBWD2Q8IUF1 395 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 CSGALNACT2Q8N6G5 542 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 HELQQ8TDG4 1101 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 HERVK_113Q902F9 699 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 ACAP3Q96P50 834 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 GDF15Q99988 308 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 ZBED2Q9BTP6 218 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 FUCA2Q9BTY2 467 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 NAT10Q9H0A0 1025 aaKnown RBP17.16■□□□□ 0.34
HPS4-216ENST00000493455 TSPY26PQ9H489 355 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 RPF1Q9H9Y2 349 aaKnown RBP17.16■□□□□ 0.34
HPS4-216ENST00000493455 TMEM161AQ9NX61 479 aa17.16■□□□□ 0.34
HPS4-216ENST00000493455 CETN3O15182 167 aa17.15■□□□□ 0.34
HPS4-216ENST00000493455 EXTL3O43909 919 aa17.15■□□□□ 0.34
HPS4-216ENST00000493455 LDHAP00338 332 aaKnown RBP17.15■□□□□ 0.34
HPS4-216ENST00000493455 MLH1P40692 756 aa17.15■□□□□ 0.34
HPS4-216ENST00000493455 SPAG1Q07617 926 aa17.15■□□□□ 0.34
HPS4-216ENST00000493455 EDRF1Q3B7T1 1238 aa17.15■□□□□ 0.34
HPS4-216ENST00000493455 LRSAM1Q6UWE0 723 aa17.15■□□□□ 0.34
HPS4-216ENST00000493455 NPAS4Q8IUM7 802 aa17.15■□□□□ 0.34
HPS4-216ENST00000493455 ABI1Q8IZP0 508 aa17.15■□□□□ 0.34
HPS4-216ENST00000493455 AOPEPQ8N6M6 819 aa17.15■□□□□ 0.34
HPS4-216ENST00000493455 RPS6KC1Q96S38 1066 aa17.15■□□□□ 0.34
HPS4-216ENST00000493455 DUSP9Q99956 384 aaKnown RBP17.15■□□□□ 0.34
HPS4-216ENST00000493455 SRRTQ9BXP5 876 aaKnown RBP17.15■□□□□ 0.34
HPS4-216ENST00000493455 RSAD1Q9HA92 442 aa17.15■□□□□ 0.34
HPS4-216ENST00000493455 RBAKQ9NYW8 714 aaPredicted RBP17.15■□□□□ 0.34
HPS4-216ENST00000493455 FRMD4BQ9Y2L6 1034 aa17.15■□□□□ 0.34
HPS4-216ENST00000493455 FNDC1Q4ZHG4 1894 aaPredicted RBP17.15■□□□□ 0.34
HPS4-216ENST00000493455 GBF1Q92538 1859 aa17.15■□□□□ 0.34
HPS4-216ENST00000493455 PDCD11Q14690 1871 aaKnown RBP17.14■□□□□ 0.33
HPS4-216ENST00000493455 TBKBP1A7MCY6 615 aa17.14■□□□□ 0.33
HPS4-216ENST00000493455 KIAA0391O15091 583 aaKnown RBP17.14■□□□□ 0.33
HPS4-216ENST00000493455 ADRB2P07550 413 aa17.14■□□□□ 0.33
HPS4-216ENST00000493455 CLTAP09496 248 aa17.14■□□□□ 0.33
HPS4-216ENST00000493455 ERCC5P28715 1186 aaPredicted RBP17.14■□□□□ 0.33
HPS4-216ENST00000493455 FKBP3Q00688 224 aaKnown RBP17.14■□□□□ 0.33
HPS4-216ENST00000493455 PPP2R3AQ06190 1150 aa17.14■□□□□ 0.33
HPS4-216ENST00000493455 SNRNP35Q16560 246 aaKnown RBP17.14■□□□□ 0.33
HPS4-216ENST00000493455 CCDC40Q4G0X9 1142 aa17.14■□□□□ 0.33
HPS4-216ENST00000493455 GLRA4Q5JXX5 417 aa17.14■□□□□ 0.33
HPS4-216ENST00000493455 CRELD2Q6UXH1 353 aaPredicted RBP17.14■□□□□ 0.33
HPS4-216ENST00000493455 AGMOQ6ZNB7 445 aa17.14■□□□□ 0.33
HPS4-216ENST00000493455 MRPL10Q7Z7H8 261 aaKnown RBP17.14■□□□□ 0.33
HPS4-216ENST00000493455 ZNF598Q86UK7 904 aaKnown RBP17.14■□□□□ 0.33
HPS4-216ENST00000493455 C12orf56Q8IXR9 622 aa17.14■□□□□ 0.33
HPS4-216ENST00000493455 ZFP42Q96MM3 310 aa17.14■□□□□ 0.33
HPS4-216ENST00000493455 GAD1Q99259 594 aa17.14■□□□□ 0.33
HPS4-216ENST00000493455 TRAIPQ9BWF2 469 aa17.14■□□□□ 0.33
HPS4-216ENST00000493455 CXCL16Q9H2A7 254 aa17.14■□□□□ 0.33
HPS4-216ENST00000493455 CPSF3Q9UKF6 684 aaKnown RBP17.14■□□□□ 0.33
HPS4-216ENST00000493455 ZNF233A6NK53 670 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 FAM189A1O60320 539 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 ZNF623O75123 536 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 EOMESO95936 686 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 POMCP01189 267 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 EPB41P11171 864 aaKnown RBP17.13■□□□□ 0.33
HPS4-216ENST00000493455 ATP2A2P16615 1042 aaKnown RBP17.13■□□□□ 0.33
HPS4-216ENST00000493455 ZNF165P49910 485 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 SCNN1GP51170 649 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 FAM189BP81408 668 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 ENOX2Q16206 610 aaKnown RBP17.13■□□□□ 0.33
HPS4-216ENST00000493455 KYAT1Q16773 422 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 CLLU1OSQ5K130 101 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 LMBRD2Q68DH5 695 aaPredicted RBP17.13■□□□□ 0.33
HPS4-216ENST00000493455 FAM186BQ8IYM0 893 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 CCDC127Q96BQ5 260 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 MED15Q96RN5 788 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 SLC9A7Q96T83 725 aa17.13■□□□□ 0.33
HPS4-216ENST00000493455 ELAC1Q9H777 363 aaKnown RBP17.13■□□□□ 0.33
HPS4-216ENST00000493455 TOPORSQ9NS56 1045 aaPredicted RBP17.13■□□□□ 0.33
HPS4-216ENST00000493455 RNF216Q9NWF9 866 aaPredicted RBP17.13■□□□□ 0.33
HPS4-216ENST00000493455 ARL5CA6NH57 179 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 BECN2A8MW95 431 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 LACTBL1A8MY62 500 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 AKAP3O75969 853 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 DLATP10515 647 aaKnown RBP17.12■□□□□ 0.33
HPS4-216ENST00000493455 PSMC2P35998 433 aaKnown RBP17.12■□□□□ 0.33
HPS4-216ENST00000493455 GLB1LQ6UWU2 654 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 LRRC55Q6ZSA7 311 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 SLC9A9Q8IVB4 645 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 BRSK2Q8IWQ3 736 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 URGCPQ8TCY9 931 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 TOP1MTQ969P6 601 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms