RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 CEP135Q66GS9 1140 aa18.75■□□□□ 0.59
LIME1-208ENST00000493265 LRSAM1Q6UWE0 723 aa18.75■□□□□ 0.59
LIME1-208ENST00000493265 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.75■□□□□ 0.59
LIME1-208ENST00000493265 RDH13Q8NBN7 331 aa18.75■□□□□ 0.59
LIME1-208ENST00000493265 LPPQ93052 612 aa18.75■□□□□ 0.59
LIME1-208ENST00000493265 FAM213AQ9BRX8 229 aa18.75■□□□□ 0.59
LIME1-208ENST00000493265 NAT10Q9H0A0 1025 aaKnown RBP18.75■□□□□ 0.59
LIME1-208ENST00000493265 TSPYL2Q9H2G4 693 aaPredicted RBP18.75■□□□□ 0.59
LIME1-208ENST00000493265 TSPY26PQ9H489 355 aa18.75■□□□□ 0.59
LIME1-208ENST00000493265 NXF3Q9H4D5 531 aaKnown RBP18.75■□□□□ 0.59
LIME1-208ENST00000493265 CXXC1Q9P0U4 656 aaPredicted RBP18.75■□□□□ 0.59
LIME1-208ENST00000493265 CGNQ9P2M7 1197 aaKnown RBP18.75■□□□□ 0.59
LIME1-208ENST00000493265 TRAF3IP3Q9Y228 551 aa18.75■□□□□ 0.59
LIME1-208ENST00000493265 IPPQ9Y573 584 aa18.75■□□□□ 0.59
LIME1-208ENST00000493265 STYXL1Q9Y6J8 313 aa18.75■□□□□ 0.59
LIME1-208ENST00000493265 CHD9Q3L8U1 2897 aa18.75■□□□□ 0.59
LIME1-208ENST00000493265 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.74■□□□□ 0.59
LIME1-208ENST00000493265 OGTO15294 1046 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 EXOC3O60645 756 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 NR2F2P24468 414 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 AKAP5P24588 427 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 LRRC63Q05C16 580 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 ADAM9Q13443 819 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 ZCWPW2Q504Y3 356 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 TTI2Q6NXR4 508 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 SLC24A5Q71RS6 500 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 TMEM192Q8IY95 271 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 FAM212AQ96EL1 285 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 MED15Q96RN5 788 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 DUSP9Q99956 384 aaKnown RBP18.74■□□□□ 0.59
LIME1-208ENST00000493265 RNF39Q9H2S5 420 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 NKX2-4Q9H2Z4 354 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 C1orf112Q9NSG2 853 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 SNTG2Q9NY99 539 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 PARP2Q9UGN5 583 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 MSRAQ9UJ68 235 aa18.74■□□□□ 0.59
LIME1-208ENST00000493265 ABHD14A-ACY1A0A1B0GW23 586 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 C9IYK1 514 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 UPP2O95045 317 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 STAG3L1P0CL83 205 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 ITGA4P13612 1032 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 RPL13P26373 211 aaKnown RBP18.73■□□□□ 0.59
LIME1-208ENST00000493265 ERCC5P28715 1186 aaPredicted RBP18.73■□□□□ 0.59
LIME1-208ENST00000493265 TNFSF9P41273 254 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 KCNJ6P48051 423 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 RAB27AP51159 221 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 SNRPFP62306 86 aaKnown RBP18.73■□□□□ 0.59
LIME1-208ENST00000493265 RAB30Q15771 203 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 CCDC85BQ15834 202 aaPredicted RBP18.73■□□□□ 0.59
LIME1-208ENST00000493265 ECHDC2Q86YB7 292 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 GPD1LQ8N335 351 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 CSGALNACT2Q8N6G5 542 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 AOPEPQ8N6M6 819 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 XXYLT1Q8NBI6 393 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 SMG8Q8ND04 991 aaKnown RBP18.73■□□□□ 0.59
LIME1-208ENST00000493265 HERVK_113Q902F9 699 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 CCDC94Q9BW85 323 aaPredicted RBP18.73■□□□□ 0.59
LIME1-208ENST00000493265 MTIF3Q9H2K0 278 aaKnown RBP18.73■□□□□ 0.59
LIME1-208ENST00000493265 LRFN2Q9ULH4 789 aa18.73■□□□□ 0.59
LIME1-208ENST00000493265 A0A0U1RQF3 1178 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 MEIS3P2A8K0S8 358 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 CETN3O15182 167 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 SKIP12755 728 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 IGFBP4P22692 258 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 CASP4P49662 377 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 ZNF165P49910 485 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 ZNF445P59923 1031 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 ADGRE1Q14246 886 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 EDRF1Q3B7T1 1238 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 HSP90AA4PQ58FG1 418 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 FAM117BQ6P1L5 589 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 TMCO2Q7Z6W1 182 aaPredicted RBP18.72■□□□□ 0.59
LIME1-208ENST00000493265 CBWD2Q8IUF1 395 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 CREBRFQ8IUR6 639 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 HACE1Q8IYU2 909 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 SRRTQ9BXP5 876 aaKnown RBP18.72■□□□□ 0.59
LIME1-208ENST00000493265 RNF19AQ9NV58 838 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 KLK14Q9P0G3 267 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 PCDHB7Q9Y5E2 793 aa18.72■□□□□ 0.59
LIME1-208ENST00000493265 EXTL3O43909 919 aa18.71■□□□□ 0.59
LIME1-208ENST00000493265 LDHAP00338 332 aaKnown RBP18.71■□□□□ 0.59
LIME1-208ENST00000493265 AMHP03971 560 aa18.71■□□□□ 0.59
LIME1-208ENST00000493265 GRM5P41594 1212 aa18.71■□□□□ 0.59
LIME1-208ENST00000493265 WDR5P61964 334 aaKnown RBP18.71■□□□□ 0.59
LIME1-208ENST00000493265 DEFB103AP81534 67 aa18.71■□□□□ 0.59
LIME1-208ENST00000493265 FKBP3Q00688 224 aaKnown RBP18.71■□□□□ 0.59
LIME1-208ENST00000493265 CT47A1Q5JQC4 288 aaPredicted RBP18.71■□□□□ 0.59
LIME1-208ENST00000493265 C12orf56Q8IXR9 622 aa18.71■□□□□ 0.59
LIME1-208ENST00000493265 ACAP3Q96P50 834 aa18.71■□□□□ 0.59
LIME1-208ENST00000493265 DMAC2Q9NW81 257 aa18.71■□□□□ 0.59
LIME1-208ENST00000493265 FRMD4BQ9Y2L6 1034 aa18.71■□□□□ 0.59
LIME1-208ENST00000493265 YBX2Q9Y2T7 364 aaKnown RBP18.71■□□□□ 0.59
LIME1-208ENST00000493265 TNFRSF10AO00220 468 aa18.7■□□□□ 0.58
LIME1-208ENST00000493265 FAM189A1O60320 539 aa18.7■□□□□ 0.58
LIME1-208ENST00000493265 EFCAB14O75071 495 aa18.7■□□□□ 0.58
LIME1-208ENST00000493265 RECQL4O94761 1208 aa18.7■□□□□ 0.58
LIME1-208ENST00000493265 BAIAP3O94812 1187 aa18.7■□□□□ 0.58
LIME1-208ENST00000493265 CLTAP09496 248 aa18.7■□□□□ 0.58
LIME1-208ENST00000493265 CXCL8P10145 99 aa18.7■□□□□ 0.58
LIME1-208ENST00000493265 FGFR1P11362 822 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms