RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606	CHPF2	Q9P2E5	772 aa		4.91	□□□□□ -1.62
UBR4-215	ENST00000492606	STRIP2	Q9ULQ0	834 aa		4.91	□□□□□ -1.62
UBR4-215	ENST00000492606	SUGT1	Q9Y2Z0	365 aa		4.91	□□□□□ -1.62
UBR4-215	ENST00000492606	PPME1	Q9Y570	386 aa		4.91	□□□□□ -1.62
UBR4-215	ENST00000492606	MYH2	Q9UKX2	1941 aa		4.91	□□□□□ -1.62
UBR4-215	ENST00000492606	MYH15	Q9Y2K3	1946 aa		4.91	□□□□□ -1.62
UBR4-215	ENST00000492606	IL16	Q14005	1332 aa		4.91	□□□□□ -1.62
UBR4-215	ENST00000492606	DNAJC25-GNG10	A0A024R161	153 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	FSD2	A1L4K1	749 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	TRABD2B	A6NFA1	517 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	HIDE1	A8MVS5	230 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	OIP5	O43482	229 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	B4GALT3	O60512	393 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	ADAM11	O75078	769 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	DEAF1	O75398	565 aa	Predicted RBP	4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	ATE1	O95260	518 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	CFB	P00751	764 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	MYL3	P08590	195 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	ALAS2	P22557	587 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	CNR2	P34972	360 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	RPS9	P46781	194 aa	Known RBP	4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	SATB1	Q01826	763 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	RPL6	Q02878	288 aa	Known RBP	4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	BTG3	Q14201	252 aa	Predicted RBP	4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	COG2	Q14746	738 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	TMEM132B	Q14DG7	1078 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	LRRC14	Q15048	493 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	TRIM71	Q2Q1W2	868 aa	Known RBP	4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	PLEKHG4	Q58EX7	1191 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	ZBTB41	Q5SVQ8	909 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	HEATR6	Q6AI08	1181 aa	Known RBP	4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	LYPD4	Q6UWN0	246 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	ANKS3	Q6ZW76	656 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	ARMCX2	Q7L311	632 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	KBTBD6	Q86V97	674 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	RBBP8NL	Q8NC74	664 aa	Predicted RBP	4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	GALNT6	Q8NCL4	622 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	ACER1	Q8TDN7	264 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	PNISR	Q8TF01	805 aa	Known RBP	4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	ADAMTS14	Q8WXS8	1223 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	CASP10	Q92851	521 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	SRRT	Q9BXP5	876 aa	Known RBP	4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	EMILIN2	Q9BXX0	1053 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	DNAJC18	Q9H819	358 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	PDGFC	Q9NRA1	345 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	ZBTB21	Q9ULJ3	1066 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	DDX49	Q9Y6V7	483 aa	Known RBP	4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	PARP14	Q460N5	1801 aa		4.9	□□□□□ -1.63
UBR4-215	ENST00000492606	F5	P12259	2224 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	TLDC2	A0PJX2	215 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	U2SURP	O15042	1029 aa	Known RBP	4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	SMAD7	O15105	426 aa	Known RBP	4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	TLX3	O43711	291 aa	Predicted RBP	4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	DNAJA2	O60884	412 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	SSB	P05455	408 aa	Known RBP eCLIP	4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	MAOB	P27338	520 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	COL8A1	P27658	744 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	PRDX5	P30044	214 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	RDX	P35241	583 aa	Known RBP	4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	CXADR	P78310	365 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	GPC5	P78333	572 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	GSTM4	Q03013	218 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	PDE4B	Q07343	736 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	NFATC3	Q12968	1075 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	AP3B2	Q13367	1082 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	RAB33A	Q14088	237 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	PLPP4	Q5VZY2	271 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	LRFN4	Q6PJG9	635 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	JAZF1	Q86VZ6	243 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	CELF2-AS1	Q8N7Q2	184 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	MAGEB6	Q8N7X4	407 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	SLC7A3	Q8WY07	619 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	MKL1	Q969V6	931 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	ATG4C	Q96DT6	458 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	GPR20	Q99678	358 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	MTG1	Q9BT17	334 aa	Predicted RBP	4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	RPP25	Q9BUL9	199 aa	Known RBP	4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	SGPP1	Q9BX95	441 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	TNKS2	Q9H2K2	1166 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	SLC32A1	Q9H598	525 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	ANTXR1	Q9H6X2	564 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	ZSWIM4	Q9H7M6	989 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	CBX8	Q9HC52	389 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	OSGEP	Q9NPF4	335 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	HOXC10	Q9NYD6	342 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	SAMM50	Q9Y512	469 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	NUP205	Q92621	2012 aa		4.89	□□□□□ -1.63
UBR4-215	ENST00000492606	EML5	Q05BV3	1969 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	CCDC194	A0A1B0GVG4	234 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	DDX3Y	O15523	660 aa	Known RBP	4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	SLC25A27	O95847	323 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	CSF1R	P07333	972 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	CELA2B	P08218	269 aa	Predicted RBP	4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	RHBDL3	P58872	404 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	MLF2	Q15773	248 aa	Predicted RBP	4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	SLC44A4	Q53GD3	710 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	TMC5	Q6UXY8	1006 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	FOXD4L3	Q6VB84	417 aa	Predicted RBP	4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	ATG14	Q6ZNE5	492 aa		4.88	□□□□□ -1.63

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