RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 PTPN22Q9Y2R2 807 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 SLC45A1Q9Y2W3 748 aa11.6□□□□□ -0.55
USP4-214ENST00000491791 ZNF233A6NK53 670 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 CCDC188H7C350 402 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 NCK2O43639 380 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 CHRNB2P17787 502 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 GLRA2P23416 452 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 EFNA5P52803 228 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 AP3M2P53677 418 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 POLGP54098 1239 aaPredicted RBP11.59□□□□□ -0.55
USP4-214ENST00000491791 NAP1L1P55209 391 aaKnown RBP11.59□□□□□ -0.55
USP4-214ENST00000491791 IRX3P78415 501 aaPredicted RBP11.59□□□□□ -0.55
USP4-214ENST00000491791 PPP2R5EQ16537 467 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 GPAT2Q6NUI2 795 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 C11orf63Q6NUN7 778 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 EMBQ6PCB8 327 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 CYFIP1Q7L576 1253 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 ZNF677Q86XU0 584 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 GLYCTKQ8IVS8 523 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 ZSWIM2Q8NEG5 633 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 CD99L2Q8TCZ2 262 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 SLC7A3Q8WY07 619 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 BBXQ8WY36 941 aaPredicted RBP11.59□□□□□ -0.55
USP4-214ENST00000491791 CTNNBL1Q8WYA6 563 aaPredicted RBP11.59□□□□□ -0.55
USP4-214ENST00000491791 POMGNT1Q8WZA1 660 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 TAF4BQ92750 862 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 SEMA4DQ92854 862 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 OPTNQ96CV9 577 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 FGD4Q96M96 766 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 NT5C1BQ96P26 610 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 RPS6KC1Q96S38 1066 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 SELENOOQ9BVL4 669 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 ELP3Q9H9T3 547 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 MED4Q9NPJ6 270 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 RAB20Q9NX57 234 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 STIM2Q9P246 746 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 RBPJLQ9UBG7 517 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 TELO2Q9Y4R8 837 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 ADGRA2Q96PE1 1338 aa11.59□□□□□ -0.55
USP4-214ENST00000491791 DOCK5Q9H7D0 1870 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 A0A0B4J269 797 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 HNRNPDLO14979 420 aaKnown RBP11.58□□□□□ -0.56
USP4-214ENST00000491791 ADCY3O60266 1144 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 FTCDO95954 541 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 OSBPP22059 807 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 STAT5BP51692 787 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 GTF2A2P52657 109 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 ZACNQ401N2 412 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 IER5Q5VY09 327 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 CDCA2Q69YH5 1023 aaPredicted RBP11.58□□□□□ -0.56
USP4-214ENST00000491791 SV2AQ7L0J3 742 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 SLC35G2Q8TBE7 412 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 ASAP3Q8TDY4 903 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 EPS8L1Q8TE68 723 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 CNKSR2Q8WXI2 1034 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 CAVIN3Q969G5 261 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.58□□□□□ -0.56
USP4-214ENST00000491791 SH2D3AQ9BRG2 576 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 LRRC1Q9BTT6 524 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 TMEM106CQ9BVX2 250 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 ZFYVE28Q9HCC9 887 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 RBM12Q9NTZ6 932 aaKnown RBP11.58□□□□□ -0.56
USP4-214ENST00000491791 PSD3Q9NYI0 1048 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 CNTN6Q9UQ52 1028 aa11.58□□□□□ -0.56
USP4-214ENST00000491791 CCL15-CCL14A0A0B4J2E2 113 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 A0A0U1RQG5 324 aaPredicted RBP11.57□□□□□ -0.56
USP4-214ENST00000491791 MIF4GDA9UHW6 222 aaKnown RBP11.57□□□□□ -0.56
USP4-214ENST00000491791 C4BPAP04003 597 aaKnown RBP11.57□□□□□ -0.56
USP4-214ENST00000491791 CYP1A2P05177 515 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 GJA5P36382 358 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 NOP2P46087 812 aaKnown RBP11.57□□□□□ -0.56
USP4-214ENST00000491791 BPIFB4P59827 614 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 TNNC1P63316 161 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 GPC5P78333 572 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 CDR2Q01850 454 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 POU5F1Q01860 360 aaKnown RBP11.57□□□□□ -0.56
USP4-214ENST00000491791 POU5F1BQ06416 359 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 DMTNQ08495 405 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 C2orf54Q08AI8 447 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 STRN3Q13033 797 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 TAF1CQ15572 869 aaPredicted RBP11.57□□□□□ -0.56
USP4-214ENST00000491791 CCL15Q16663 113 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 ARHGAP44Q17R89 818 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 MTERF2Q49AM1 385 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 CELF3Q5SZQ8 465 aaKnown RBP11.57□□□□□ -0.56
USP4-214ENST00000491791 PPP1R2P3Q6NXS1 205 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 CCDC62Q6P9F0 684 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 CRELD2Q6UXH1 353 aaPredicted RBP11.57□□□□□ -0.56
USP4-214ENST00000491791 GADL1Q6ZQY3 521 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 SEPT14Q6ZU15 432 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 PEX26Q7Z412 305 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 IFT20Q8IY31 132 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 MREGQ8N565 214 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 METTL13Q8N6R0 699 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 TAS1R2Q8TE23 839 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 ATP8B4Q8TF62 1192 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 TCP11Q8WWU5 503 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 DDX1Q92499 740 aaKnown RBP11.57□□□□□ -0.56
USP4-214ENST00000491791 SEC14L1Q92503 715 aa11.57□□□□□ -0.56
USP4-214ENST00000491791 ARMC5Q96C12 935 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms