RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ZNF280BQ86YH2 543 aa17.82■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 GRAMD1CQ8IYS0 662 aa17.82■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 SLC39A11Q8N1S5 342 aa17.82■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 CEP120Q8N960 986 aa17.82■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 SPPL3Q8TCT6 385 aa17.82■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 PAGE5Q96GU1 130 aa17.82■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 STRA6Q9BX79 667 aa17.82■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 SPG21Q9NZD8 308 aa17.82■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 DNAJB4Q9UDY4 337 aa17.82■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 PCDHB13Q9Y5F0 798 aa17.82■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 PLXNA4Q9HCM2 1894 aa17.82■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 B4GALT3O60512 393 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 GALTP07902 379 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 MYBP10242 640 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 SLC11A1P49279 550 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 CASP5P51878 434 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 YARSP54577 528 aaKnown RBP17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 OSTNP61366 133 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 PLCB3Q01970 1234 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 UBE3AQ05086 875 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 CUL4BQ13620 913 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 TIGD5Q53EQ6 642 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 L1TD1Q5T7N2 865 aaKnown RBP17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 GSTCDQ8NEC7 633 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 POF1BQ8WVV4 589 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 ACCSQ96QU6 501 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 TMEM175Q9BSA9 504 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 TOPORSQ9NS56 1045 aaPredicted RBP17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 EXOC7Q9UPT5 735 aa17.81■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 NT5C1B-RDH14C9J2C7 533 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 CSPG5O95196 566 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 DNAJB1P25685 340 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 KRT17Q04695 432 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 DSC1Q08554 894 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 CCDC85BQ15834 202 aaPredicted RBP17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 FAM26FQ5R3K3 315 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 SLC39A4Q6P5W5 647 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 STXBP4Q6ZWJ1 553 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 COLGALT2Q8IYK4 626 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 PPM1EQ8WY54 764 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 ACAP3Q96P50 834 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 FGFBP2Q9BYJ0 223 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 HAPLN2Q9GZV7 340 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 LZTS1Q9Y250 596 aa17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 TDRD15B5MCY1 1934 aaKnown RBP17.8■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 PVALEFA0A1B0GWK0 134 aa17.79■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 PTGESO14684 152 aa17.79■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 ZNF202O95125 648 aa17.79■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 MYL1P05976 194 aa17.79■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 THP07101 528 aa17.79■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 EHHADHQ08426 723 aa17.79■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 KRBA2Q6ZNG9 492 aa17.79■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 HPS3Q969F9 1004 aa17.79■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 TMEM169Q96HH4 297 aa17.79■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 NSUN3Q9H649 340 aaKnown RBP17.79■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 TSHZ2Q9NRE2 1034 aa17.79■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 PUF60Q9UHX1 559 aaKnown RBP17.79■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 FAN1Q9Y2M0 1017 aa17.79■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 ATG2AQ2TAZ0 1938 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 A0A0B4J269 797 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 ANKRD63C9JTQ0 380 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 NRP1O14786 923 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 OGTO15294 1046 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 NR1I2O75469 434 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 ALDH2P05091 517 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 OR1G1P47890 313 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 KCNA1Q09470 495 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 CAMK1Q14012 370 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 KYAT1Q16773 422 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 SEZ6Q53EL9 994 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 TMEM173Q86WV6 379 aaPredicted RBP17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 FMR1NBQ8N0W7 255 aaPredicted RBP17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 IGSF21Q96ID5 467 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 SNX27Q96L92 541 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 MSTO1Q9BUK6 570 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 CXCL16Q9H2A7 254 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 TLR9Q9NR96 1032 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 STYXL1Q9Y6J8 313 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 MYO9BQ13459 2157 aa17.78■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 TISP43B9A030 160 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 EIF3DO15371 548 aaKnown RBP eCLIP17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 KLRC4O43908 158 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 PRPF6O94906 941 aaKnown RBP17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 TUSC3Q13454 348 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 XKR4Q5GH76 650 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 GLRA4Q5JXX5 417 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 SLFN12LQ6IEE8 588 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 ALKAL1Q6UXT8 129 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 SYCP3Q8IZU3 236 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 GLIS3Q8NEA6 775 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 BCL7CQ8WUZ0 217 aaPredicted RBP17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 CCDC34Q96HJ3 373 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 IPO9Q96P70 1041 aaKnown RBP17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 IKZF4Q9H2S9 585 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 TMEM206Q9H813 350 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 EXOC1Q9NV70 894 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 CNTN3Q9P232 1028 aa17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 PRG3Q9Y2Y8 225 aaPredicted RBP17.77■□□□□ 0.44
MSH5-SAPCD1-206ENST00000491552 UBE4BO95155 1302 aa17.76■□□□□ 0.43
MSH5-SAPCD1-206ENST00000491552 FAM189A1O60320 539 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms