RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 PSRC1Q6PGN9 363 aaPredicted RBP15.12■□□□□ 0.01
C9orf3-221ENST00000489562 FAM186BQ8IYM0 893 aa15.12■□□□□ 0.01
C9orf3-221ENST00000489562 THNSL1Q8IYQ7 743 aa15.12■□□□□ 0.01
C9orf3-221ENST00000489562 PGBD4Q96DM1 585 aa15.12■□□□□ 0.01
C9orf3-221ENST00000489562 SAAL1Q96ER3 474 aa15.12■□□□□ 0.01
C9orf3-221ENST00000489562 FAM213AQ9BRX8 229 aa15.12■□□□□ 0.01
C9orf3-221ENST00000489562 TOPORSQ9NS56 1045 aaPredicted RBP15.12■□□□□ 0.01
C9orf3-221ENST00000489562 MAGEC2Q9UBF1 373 aaPredicted RBP15.12■□□□□ 0.01
C9orf3-221ENST00000489562 CPSF3Q9UKF6 684 aaKnown RBP15.12■□□□□ 0.01
C9orf3-221ENST00000489562 ZMYND8Q9ULU4 1186 aaPredicted RBP15.12■□□□□ 0.01
C9orf3-221ENST00000489562 IPPQ9Y573 584 aa15.12■□□□□ 0.01
C9orf3-221ENST00000489562 STAG3L1P0CL83 205 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 SYN1P17600 705 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 YARSP54577 528 aaKnown RBP15.11■□□□□ 0.01
C9orf3-221ENST00000489562 MARSP56192 900 aaKnown RBP15.11■□□□□ 0.01
C9orf3-221ENST00000489562 FAM189BP81408 668 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 SURF1Q15526 300 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 CCDC40Q4G0X9 1142 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 CDKAL1Q5VV42 579 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 INTS8Q75QN2 995 aaKnown RBP15.11■□□□□ 0.01
C9orf3-221ENST00000489562 FRMD5Q7Z6J6 570 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 MRPL10Q7Z7H8 261 aaKnown RBP15.11■□□□□ 0.01
C9orf3-221ENST00000489562 LUZP1Q86V48 1076 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 ECHDC2Q86YB7 292 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 BRSK2Q8IWQ3 736 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 CD302Q8IX05 232 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 ANKRD20A12PQ8NF67 263 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 LINC01599Q8WXQ3 324 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 RSPH1Q8WYR4 309 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 VWCEQ96DN2 955 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 ACAP3Q96P50 834 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 NXF3Q9H4D5 531 aaKnown RBP15.11■□□□□ 0.01
C9orf3-221ENST00000489562 ELAC1Q9H777 363 aaKnown RBP15.11■□□□□ 0.01
C9orf3-221ENST00000489562 RPF1Q9H9Y2 349 aaKnown RBP15.11■□□□□ 0.01
C9orf3-221ENST00000489562 PLEKHA5Q9HAU0 1116 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 UBN1Q9NPG3 1134 aa15.11■□□□□ 0.01
C9orf3-221ENST00000489562 GOLGA8IPA6NC78 632 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 GOLGA8JA6NMD2 632 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 ENPP3O14638 875 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 AKAP3O75969 853 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 IL18RAPO95256 599 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 ITGA4P13612 1032 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 KRT13P13646 458 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 EEF1GP26641 437 aaKnown RBP15.1■□□□□ 0.01
C9orf3-221ENST00000489562 CASP4P49662 377 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 ACOT2P49753 483 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 RGS19P49795 217 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 PPP2R3AQ06190 1150 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 CRELD2Q6UXH1 353 aaPredicted RBP15.1■□□□□ 0.01
C9orf3-221ENST00000489562 RTN4RL1Q86UN2 441 aaPredicted RBP15.1■□□□□ 0.01
C9orf3-221ENST00000489562 CBWD2Q8IUF1 395 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 CEP120Q8N960 986 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 SMG8Q8ND04 991 aaKnown RBP15.1■□□□□ 0.01
C9orf3-221ENST00000489562 TMC2Q8TDI7 906 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 MFSD14AQ96MC6 490 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 TSPAN18Q96SJ8 248 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 MTIF3Q9H2K0 278 aaKnown RBP15.1■□□□□ 0.01
C9orf3-221ENST00000489562 FANCLQ9NW38 375 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 TMEM161AQ9NX61 479 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 RBAKQ9NYW8 714 aaPredicted RBP15.1■□□□□ 0.01
C9orf3-221ENST00000489562 ARMCX3Q9UH62 379 aaPredicted RBP15.1■□□□□ 0.01
C9orf3-221ENST00000489562 GIT1Q9Y2X7 761 aa15.1■□□□□ 0.01
C9orf3-221ENST00000489562 FNDC1Q4ZHG4 1894 aaPredicted RBP15.1■□□□□ 0.01
C9orf3-221ENST00000489562 HOXA2O43364 376 aa15.09■□□□□ 0.01
C9orf3-221ENST00000489562 FGBP02675 491 aa15.09■□□□□ 0.01
C9orf3-221ENST00000489562 PRKCSHP14314 528 aaPredicted RBP15.09■□□□□ 0.01
C9orf3-221ENST00000489562 ZNF18P17022 549 aa15.09■□□□□ 0.01
C9orf3-221ENST00000489562 MCCD1P59942 119 aaPredicted RBP15.09■□□□□ 0.01
C9orf3-221ENST00000489562 OSTNP61366 133 aa15.09■□□□□ 0.01
C9orf3-221ENST00000489562 CYP24A1Q07973 514 aa15.09■□□□□ 0.01
C9orf3-221ENST00000489562 PSMD6Q15008 389 aa15.09■□□□□ 0.01
C9orf3-221ENST00000489562 ZNF598Q86UK7 904 aaKnown RBP15.09■□□□□ 0.01
C9orf3-221ENST00000489562 IRF2BP1Q8IU81 584 aa15.09■□□□□ 0.01
C9orf3-221ENST00000489562 NPAS4Q8IUM7 802 aa15.09■□□□□ 0.01
C9orf3-221ENST00000489562 RDH13Q8NBN7 331 aa15.09■□□□□ 0.01
C9orf3-221ENST00000489562 EEF2KMTQ96G04 330 aa15.09■□□□□ 0.01
C9orf3-221ENST00000489562 CNOT6LQ96LI5 555 aaKnown RBP15.09■□□□□ 0.01
C9orf3-221ENST00000489562 ASB7Q9H672 318 aa15.09■□□□□ 0.01
C9orf3-221ENST00000489562 SAMSN1Q9NSI8 373 aaKnown RBP15.09■□□□□ 0.01
C9orf3-221ENST00000489562 SNTG2Q9NY99 539 aa15.09■□□□□ 0.01
C9orf3-221ENST00000489562 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.09■□□□□ 0.01
C9orf3-221ENST00000489562 MKI67P46013 3256 aaKnown RBP15.09■□□□□ 0.01
C9orf3-221ENST00000489562 PTPRSQ13332 1948 aa15.08■□□□□ 0
C9orf3-221ENST00000489562 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.08■□□□□ 0
C9orf3-221ENST00000489562 KCNJ18B7U540 433 aa15.08■□□□□ 0
C9orf3-221ENST00000489562 STX10O60499 249 aa15.08■□□□□ 0
C9orf3-221ENST00000489562 RECQL4O94761 1208 aa15.08■□□□□ 0
C9orf3-221ENST00000489562 AMHP03971 560 aa15.08■□□□□ 0
C9orf3-221ENST00000489562 ADRB2P07550 413 aa15.08■□□□□ 0
C9orf3-221ENST00000489562 TPM2P07951 284 aa15.08■□□□□ 0
C9orf3-221ENST00000489562 CXCL8P10145 99 aa15.08■□□□□ 0
C9orf3-221ENST00000489562 ACRP10323 421 aa15.08■□□□□ 0
C9orf3-221ENST00000489562 ATF7P17544 494 aaPredicted RBP15.08■□□□□ 0
C9orf3-221ENST00000489562 CDK11BP21127 795 aaKnown RBP15.08■□□□□ 0
C9orf3-221ENST00000489562 TNFSF9P41273 254 aa15.08■□□□□ 0
C9orf3-221ENST00000489562 KCNJ6P48051 423 aa15.08■□□□□ 0
C9orf3-221ENST00000489562 BFSP1Q12934 665 aa15.08■□□□□ 0
C9orf3-221ENST00000489562 KCNJ12Q14500 433 aa15.08■□□□□ 0
C9orf3-221ENST00000489562 ENOX2Q16206 610 aaKnown RBP15.08■□□□□ 0
C9orf3-221ENST00000489562 TCTN1Q2MV58 587 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms