RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 EXOC7Q9UPT5 735 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 HNRNPH1P31943 449 aaKnown RBP19.26■□□□□ 0.67
VIM-206ENST00000487938 SMTNP53814 917 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 FAM83AQ86UY5 434 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 RTKN2Q8IZC4 609 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 SEC16BQ96JE7 1060 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 SELENOSQ9BQE4 189 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 SLC38A10Q9HBR0 1119 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 TMEM8AQ9HCN3 771 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 KMT5AQ9NQR1 393 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 RAB20Q9NX57 234 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 WNT10BO00744 389 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 PMM2O15305 246 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 FSBPO95073 299 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 KRT5P13647 590 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 SLCO1A2P46721 670 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 PDE6CP51160 858 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 SNRPFP62306 86 aaKnown RBP19.26■□□□□ 0.67
VIM-206ENST00000487938 CDR2Q01850 454 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 SIX1Q15475 284 aaPredicted RBP19.26■□□□□ 0.67
VIM-206ENST00000487938 FKBP1CQ5VVH2 108 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 SLC39A4Q6P5W5 647 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 CPLX4Q7Z7G2 160 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 POMGNT1Q8WZA1 660 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 MTUS1Q9ULD2 1270 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 USP20Q9Y2K6 914 aa19.26■□□□□ 0.67
VIM-206ENST00000487938 COL4A5P29400 1685 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 WDR64B1ANS9 1081 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 WDR46O15213 610 aaKnown RBP19.25■□□□□ 0.67
VIM-206ENST00000487938 CLDN3O15551 220 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 GGPS1O95749 300 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 PAEPP09466 180 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 CHN1P15882 459 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 GPC3P51654 580 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 SF3A3Q12874 501 aaKnown RBP eCLIP19.25■□□□□ 0.67
VIM-206ENST00000487938 DMP1Q13316 513 aaPredicted RBP19.25■□□□□ 0.67
VIM-206ENST00000487938 BYSLQ13895 437 aaKnown RBP19.25■□□□□ 0.67
VIM-206ENST00000487938 ARHGEF16Q5VV41 709 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 MMS22LQ6ZRQ5 1243 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 CCDC25Q86WR0 208 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 FBXL13Q8NEE6 735 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 MORC4Q8TE76 937 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 DDX1Q92499 740 aaKnown RBP19.25■□□□□ 0.67
VIM-206ENST00000487938 NT5C1BQ96P26 610 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 MTRF1LQ9UGC7 380 aaKnown RBP19.25■□□□□ 0.67
VIM-206ENST00000487938 GTF3C4Q9UKN8 822 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 RWDD2BP57060 319 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 SNX1Q13596 522 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 RNF207Q6ZRF8 634 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 SV2AQ7L0J3 742 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 MAP4K3Q8IVH8 894 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 EPS8L3Q8TE67 593 aaKnown RBP19.25■□□□□ 0.67
VIM-206ENST00000487938 C1orf54Q8WWF1 131 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 CABS1Q96KC9 395 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 XPO6Q96QU8 1125 aaKnown RBP19.25■□□□□ 0.67
VIM-206ENST00000487938 PDCD2LQ9BRP1 358 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 TIPINQ9BVW5 301 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 PXMP2Q9NR77 195 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 GGA2Q9UJY4 613 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 COQ4Q9Y3A0 265 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 TELO2Q9Y4R8 837 aa19.25■□□□□ 0.67
VIM-206ENST00000487938 CTDP1Q9Y5B0 961 aaPredicted RBP19.25■□□□□ 0.67
VIM-206ENST00000487938 RGS16O15492 202 aaPredicted RBP19.24■□□□□ 0.67
VIM-206ENST00000487938 GRIN3BO60391 1043 aa19.24■□□□□ 0.67
VIM-206ENST00000487938 CTNND1O60716 968 aaKnown RBP19.24■□□□□ 0.67
VIM-206ENST00000487938 ACAD10Q6JQN1 1059 aa19.24■□□□□ 0.67
VIM-206ENST00000487938 KCNV1Q6PIU1 500 aa19.24■□□□□ 0.67
VIM-206ENST00000487938 CCDC121Q6ZUS5 278 aa19.24■□□□□ 0.67
VIM-206ENST00000487938 CNPY4Q8N129 248 aa19.24■□□□□ 0.67
VIM-206ENST00000487938 TRIM7Q9C029 511 aa19.24■□□□□ 0.67
VIM-206ENST00000487938 CNOT10Q9H9A5 744 aaKnown RBP19.24■□□□□ 0.67
VIM-206ENST00000487938 ANKEF1Q9NU02 776 aa19.24■□□□□ 0.67
VIM-206ENST00000487938 SORBS3O60504 671 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 JAK3P52333 1124 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 CYP1B1Q16678 543 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 C2CD6Q53TS8 623 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 ERMARDQ5T6L9 678 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 ICE2Q659A1 982 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 CEP170P1Q96L14 293 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 PARP2Q9UGN5 583 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 SP4Q02446 784 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 MAP3K10Q02779 954 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 ACTN3Q08043 901 aaPredicted RBP19.23■□□□□ 0.67
VIM-206ENST00000487938 PPP1R7Q15435 360 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 SPRED3Q2MJR0 410 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 LMBRD2Q68DH5 695 aaPredicted RBP19.23■□□□□ 0.67
VIM-206ENST00000487938 KIFAP3Q92845 792 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 ART4Q93070 314 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 PGM2Q96G03 612 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 WNK4Q96J92 1243 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 MFSD14AQ96MC6 490 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 PDGFDQ9GZP0 370 aaPredicted RBP19.23■□□□□ 0.67
VIM-206ENST00000487938 UVRAGQ9P2Y5 699 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 GABBR1Q9UBS5 961 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 RIPK3Q9Y572 518 aa19.23■□□□□ 0.67
VIM-206ENST00000487938 RIPK2O43353 540 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 DRD4P21917 467 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 KRT76Q01546 638 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 GHRHRQ02643 423 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 CYP24A1Q07973 514 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms