RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CLDN3O15551 220 aa8.81□□□□□ -1
USP40-216ENST00000485943 MGEA5O60502 916 aa8.81□□□□□ -1
USP40-216ENST00000485943 TSPAN1O60635 241 aa8.81□□□□□ -1
USP40-216ENST00000485943 RB1P06400 928 aa8.81□□□□□ -1
USP40-216ENST00000485943 ARF4P18085 180 aaPredicted RBP8.81□□□□□ -1
USP40-216ENST00000485943 SYKP43405 635 aa8.81□□□□□ -1
USP40-216ENST00000485943 NPTX2P47972 431 aa8.81□□□□□ -1
USP40-216ENST00000485943 GRIN1Q05586 938 aa8.81□□□□□ -1
USP40-216ENST00000485943 MBTD1Q05BQ5 628 aa8.81□□□□□ -1
USP40-216ENST00000485943 PKP1Q13835 747 aa8.81□□□□□ -1
USP40-216ENST00000485943 HSP90AA2PQ14568 343 aaPredicted RBP8.81□□□□□ -1
USP40-216ENST00000485943 GRIN2CQ14957 1233 aa8.81□□□□□ -1
USP40-216ENST00000485943 EPC2Q52LR7 807 aa8.81□□□□□ -1
USP40-216ENST00000485943 TIGD5Q53EQ6 642 aa8.81□□□□□ -1
USP40-216ENST00000485943 NOMO2Q5JPE7 1267 aa8.81□□□□□ -1
USP40-216ENST00000485943 KIAA1841Q6NSI8 718 aa8.81□□□□□ -1
USP40-216ENST00000485943 C1orf186Q6ZWK4 172 aa8.81□□□□□ -1
USP40-216ENST00000485943 ZBTB33Q86T24 672 aa8.81□□□□□ -1
USP40-216ENST00000485943 GDPD5Q8WTR4 605 aa8.81□□□□□ -1
USP40-216ENST00000485943 LPPQ93052 612 aa8.81□□□□□ -1
USP40-216ENST00000485943 PNMA5Q96PV4 448 aa8.81□□□□□ -1
USP40-216ENST00000485943 REEP2Q9BRK0 252 aa8.81□□□□□ -1
USP40-216ENST00000485943 C17orf80Q9BSJ5 609 aa8.81□□□□□ -1
USP40-216ENST00000485943 MMTAG2Q9BU76 263 aaKnown RBP8.81□□□□□ -1
USP40-216ENST00000485943 KIFC3Q9BVG8 833 aa8.81□□□□□ -1
USP40-216ENST00000485943 PLVAPQ9BX97 442 aa8.81□□□□□ -1
USP40-216ENST00000485943 EXOC1Q9NV70 894 aa8.81□□□□□ -1
USP40-216ENST00000485943 PANK4Q9NVE7 773 aa8.81□□□□□ -1
USP40-216ENST00000485943 MTMR10Q9NXD2 777 aa8.81□□□□□ -1
USP40-216ENST00000485943 SEL1LQ9UBV2 794 aa8.81□□□□□ -1
USP40-216ENST00000485943 PCDHA7Q9UN72 937 aa8.81□□□□□ -1
USP40-216ENST00000485943 STXBP5LQ9Y2K9 1186 aa8.81□□□□□ -1
USP40-216ENST00000485943 GDAQ9Y2T3 454 aa8.81□□□□□ -1
USP40-216ENST00000485943 TDRD15B5MCY1 1934 aaKnown RBP8.8□□□□□ -1
USP40-216ENST00000485943 TCHHQ07283 1943 aa8.8□□□□□ -1
USP40-216ENST00000485943 NPHP3-ACAD11A0A0J9YXS1 232 aa8.8□□□□□ -1
USP40-216ENST00000485943 XPOTO43592 962 aaKnown RBP8.8□□□□□ -1
USP40-216ENST00000485943 KIF20AO95235 890 aa8.8□□□□□ -1
USP40-216ENST00000485943 POMCP01189 267 aa8.8□□□□□ -1
USP40-216ENST00000485943 BMPR1AP36894 532 aa8.8□□□□□ -1
USP40-216ENST00000485943 AFMP43652 599 aa8.8□□□□□ -1
USP40-216ENST00000485943 OR1G1P47890 313 aa8.8□□□□□ -1
USP40-216ENST00000485943 SLC12A3P55017 1021 aa8.8□□□□□ -1
USP40-216ENST00000485943 OSTNP61366 133 aa8.8□□□□□ -1
USP40-216ENST00000485943 ERVK-21P61565 698 aa8.8□□□□□ -1
USP40-216ENST00000485943 HTRA4P83105 476 aaPredicted RBP8.8□□□□□ -1
USP40-216ENST00000485943 ALCAMQ13740 583 aa8.8□□□□□ -1
USP40-216ENST00000485943 KYAT1Q16773 422 aa8.8□□□□□ -1
USP40-216ENST00000485943 AAK1Q2M2I8 961 aa8.8□□□□□ -1
USP40-216ENST00000485943 TCTN1Q2MV58 587 aa8.8□□□□□ -1
USP40-216ENST00000485943 NAALADL2Q58DX5 795 aa8.8□□□□□ -1
USP40-216ENST00000485943 ELMSAN1Q6PJG2 1045 aa8.8□□□□□ -1
USP40-216ENST00000485943 TMC7Q7Z402 723 aa8.8□□□□□ -1
USP40-216ENST00000485943 HAUS6Q7Z4H7 955 aa8.8□□□□□ -1
USP40-216ENST00000485943 CDR2LQ86X02 465 aaPredicted RBP8.8□□□□□ -1
USP40-216ENST00000485943 FSIP1Q8NA03 581 aa8.8□□□□□ -1
USP40-216ENST00000485943 LEO1Q8WVC0 666 aaPredicted RBP8.8□□□□□ -1
USP40-216ENST00000485943 MRPS27Q92552 414 aaKnown RBP8.8□□□□□ -1
USP40-216ENST00000485943 ACAP3Q96P50 834 aa8.8□□□□□ -1
USP40-216ENST00000485943 CEP89Q96ST8 783 aa8.8□□□□□ -1
USP40-216ENST00000485943 OSBPL7Q9BZF2 842 aa8.8□□□□□ -1
USP40-216ENST00000485943 TNMDQ9H2S6 317 aa8.8□□□□□ -1
USP40-216ENST00000485943 TTYH1Q9H313 450 aaPredicted RBP8.8□□□□□ -1
USP40-216ENST00000485943 MINDY3Q9H8M7 445 aa8.8□□□□□ -1
USP40-216ENST00000485943 TYW1Q9NV66 732 aaKnown RBP8.8□□□□□ -1
USP40-216ENST00000485943 CHMP5Q9NZZ3 219 aa8.8□□□□□ -1
USP40-216ENST00000485943 TBC1D7Q9P0N9 293 aa8.8□□□□□ -1
USP40-216ENST00000485943 STK39Q9UEW8 545 aa8.8□□□□□ -1
USP40-216ENST00000485943 USP25Q9UHP3 1055 aa8.8□□□□□ -1
USP40-216ENST00000485943 KCNH3Q9ULD8 1083 aa8.8□□□□□ -1
USP40-216ENST00000485943 GIT1Q9Y2X7 761 aa8.8□□□□□ -1
USP40-216ENST00000485943 IPPQ9Y573 584 aa8.8□□□□□ -1
USP40-216ENST00000485943 RALGAPA2Q2PPJ7 1873 aa8.8□□□□□ -1
USP40-216ENST00000485943 FSD2A1L4K1 749 aa8.79□□□□□ -1
USP40-216ENST00000485943 RFXAPO00287 272 aa8.79□□□□□ -1
USP40-216ENST00000485943 B4GALT5O43286 388 aa8.79□□□□□ -1
USP40-216ENST00000485943 F12P00748 615 aaPredicted RBP8.79□□□□□ -1
USP40-216ENST00000485943 ALDH2P05091 517 aa8.79□□□□□ -1
USP40-216ENST00000485943 THP07101 528 aa8.79□□□□□ -1
USP40-216ENST00000485943 MLH1P40692 756 aa8.79□□□□□ -1
USP40-216ENST00000485943 GATMP50440 423 aa8.79□□□□□ -1
USP40-216ENST00000485943 VAC14Q08AM6 782 aa8.79□□□□□ -1
USP40-216ENST00000485943 NOLC1Q14978 699 aaKnown RBP eCLIP8.79□□□□□ -1
USP40-216ENST00000485943 POSTNQ15063 836 aa8.79□□□□□ -1
USP40-216ENST00000485943 CDCA2Q69YH5 1023 aaPredicted RBP8.79□□□□□ -1
USP40-216ENST00000485943 ADALQ6DHV7 355 aa8.79□□□□□ -1
USP40-216ENST00000485943 SLFN12LQ6IEE8 588 aa8.79□□□□□ -1
USP40-216ENST00000485943 KANK3Q6NY19 840 aa8.79□□□□□ -1
USP40-216ENST00000485943 MPZL3Q6UWV2 235 aa8.79□□□□□ -1
USP40-216ENST00000485943 KCNK18Q7Z418 384 aa8.79□□□□□ -1
USP40-216ENST00000485943 RTN4RL1Q86UN2 441 aaPredicted RBP8.79□□□□□ -1
USP40-216ENST00000485943 LINC01599Q8WXQ3 324 aa8.79□□□□□ -1
USP40-216ENST00000485943 BSNDQ8WZ55 320 aa8.79□□□□□ -1
USP40-216ENST00000485943 STAMQ92783 540 aa8.79□□□□□ -1
USP40-216ENST00000485943 CALR3Q96L12 384 aaKnown RBP8.79□□□□□ -1
USP40-216ENST00000485943 ACCSQ96QU6 501 aa8.79□□□□□ -1
USP40-216ENST00000485943 MSTO1Q9BUK6 570 aa8.79□□□□□ -1
USP40-216ENST00000485943 COLEC11Q9BWP8 271 aa8.79□□□□□ -1
USP40-216ENST00000485943 LMAN2LQ9H0V9 348 aa8.79□□□□□ -1
USP40-216ENST00000485943 IGFLR1Q9H665 355 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms