RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TBKBP1A7MCY6 615 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 PRR5-ARHGAP8B1AHC4 643 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 TRIM24O15164 1050 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 NCR1O76036 304 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 OSMP13725 252 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 HSP90B1P14625 803 aaKnown RBP4.54□□□□□ -1.68
VPS50-216ENST00000484954 ERVK-21P61565 698 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 NHLH2Q02577 135 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 LRCH2Q5VUJ6 765 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 METRNLQ641Q3 311 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 ULK2Q8IYT8 1036 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 WDR66Q8TBY9 1149 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 HOXB13Q92826 284 aaPredicted RBP4.54□□□□□ -1.68
VPS50-216ENST00000484954 AHCYL2Q96HN2 611 aaKnown RBP4.54□□□□□ -1.68
VPS50-216ENST00000484954 SLC2A13Q96QE2 648 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 TTPALQ9BTX7 342 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 LDAHQ9H6V9 325 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 FZD1Q9UP38 647 aa4.54□□□□□ -1.68
VPS50-216ENST00000484954 ATRNL1Q5VV63 1379 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 PNPLA7Q6ZV29 1317 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 CENPVL1A0A0U1RR11 272 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 B5MCH6 92 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 RAMP2O60895 175 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 GASTP01350 101 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 ITGB1P05556 798 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 ZSCAN20P17040 1043 aaPredicted RBP4.53□□□□□ -1.68
VPS50-216ENST00000484954 CRHR1P34998 444 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 PTPN7P35236 360 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 PTGS2P35354 604 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 COL10A1Q03692 680 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 FSTL1Q12841 308 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 BMT2Q1RMZ1 405 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 PDCD4Q53EL6 469 aaKnown RBP4.53□□□□□ -1.68
VPS50-216ENST00000484954 MBNL2Q5VZF2 373 aaKnown RBP4.53□□□□□ -1.68
VPS50-216ENST00000484954 LRRC55Q6ZSA7 311 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 GDF7Q7Z4P5 450 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 GPR156Q8NFN8 814 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 PROKR1Q8TCW9 393 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 TFAP2CQ92754 450 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 ACE2Q9BYF1 805 aaPredicted RBP4.53□□□□□ -1.68
VPS50-216ENST00000484954 DNAJC28Q9NX36 388 aa4.53□□□□□ -1.68
VPS50-216ENST00000484954 GRID2IPA4D2P6 1211 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 CXorf49A8MYA2 514 aaPredicted RBP4.52□□□□□ -1.69
VPS50-216ENST00000484954 FOXN1O15353 648 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 RECQL4O94761 1208 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 ABHD16AO95870 558 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 ALOX15P16050 662 aaPredicted RBP4.52□□□□□ -1.69
VPS50-216ENST00000484954 FPR1P21462 350 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 BMP5P22003 454 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 PROZP22891 400 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 SREBF1P36956 1147 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 MTNR1BP49286 362 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 FLT3LGP49771 235 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 SEPT2Q15019 361 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 FAM102AQ5T9C2 384 aaPredicted RBP4.52□□□□□ -1.69
VPS50-216ENST00000484954 LAIR1Q6GTX8 287 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 EFCAB12Q6NXP0 572 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 DRICH1Q6PGQ1 229 aaPredicted RBP4.52□□□□□ -1.69
VPS50-216ENST00000484954 ZNF572Q7Z3I7 529 aaPredicted RBP4.52□□□□□ -1.69
VPS50-216ENST00000484954 SPATS2Q86XZ4 545 aaKnown RBP4.52□□□□□ -1.69
VPS50-216ENST00000484954 OR7D4Q8NG98 312 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 OR2I1PQ8NGU4 316 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 STON2Q8WXE9 905 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 FAM193BQ96PV7 902 aaPredicted RBP4.52□□□□□ -1.69
VPS50-216ENST00000484954 SLC46A2Q9BY10 475 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 POGKQ9P215 609 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 ANKFY1Q9P2R3 1169 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 SIK3Q9Y2K2 1263 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 PCDHGA2Q9Y5H1 932 aa4.52□□□□□ -1.69
VPS50-216ENST00000484954 PHF2O75151 1096 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 NDUFA10O95299 355 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 ECHS1P30084 290 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 MCAMP43121 646 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 SLC6A9P48067 706 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 CHN2P52757 468 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 TIGD2Q4W5G0 525 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 FAM47AQ5JRC9 791 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 AFMIDQ63HM1 303 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 DDX42Q86XP3 938 aaKnown RBP eCLIP4.51□□□□□ -1.69
VPS50-216ENST00000484954 SYNE4Q8N205 404 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 PQLC1Q8N2U9 271 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 GPR150Q8NGU9 434 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 ATL2Q8NHH9 583 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 FATE1Q969F0 183 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 PHACTR3Q96KR7 559 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 GREM2Q9H772 168 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 BCO1Q9HAY6 547 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 AKIP1Q9NQ31 210 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 DKK2Q9UBU2 259 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 MAP3K2Q9Y2U5 619 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 PHLDB1Q86UU1 1377 aa4.51□□□□□ -1.69
VPS50-216ENST00000484954 CCDC78A2IDD5 438 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 UNC119BA6NIH7 251 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 DRGXA6NNA5 263 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 MTHFD2P13995 350 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 LAG3P18627 525 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 PCSK1P29120 753 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 GUCY1A2P33402 732 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 ALDH1A3P47895 512 aa4.5□□□□□ -1.69
VPS50-216ENST00000484954 RAP2BP61225 183 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms